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Bioconda Kraken2 build standard database issue #148

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JLNutrition opened this issue Nov 20, 2020 · 1 comment
Open

Bioconda Kraken2 build standard database issue #148

JLNutrition opened this issue Nov 20, 2020 · 1 comment

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@JLNutrition
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I have just started learning about kraken and installed bioconda kraken2 on our high speed cluster. I see that it is version 2.0.7.
I can not build the standard database and I get the follow error

Downloading nucleotide est accession to taxon map...rsync: link_stat "/taxonomy/accession2taxid/nucl_est.accession2taxid.gz" (in pub) failed: No such file or directory (2)
rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1651) [Receiver=3.1.2]

I have read previous thread about pulling data from NCBI, but I don't see how this issue can be fixed when using bioconda version of kraken.

Thanks!

@jenniferlu717
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Have you tried running with the --use-ftp option?

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