diff --git a/dev/_examples/build_model.html b/dev/_examples/build_model.html index c8dc69ad..5c430e7e 100644 --- a/dev/_examples/build_model.html +++ b/dev/_examples/build_model.html @@ -564,7 +564,7 @@
# NOTE: copy this line (without !) to your shell for more direct feedback
# NOTE: as of hydromt version 0.7.0 the region argument is optional and should be preceded by -r or --region
# NOTE: the resolution argument has been removed since hydromt v0.7.0 and can now only be configured from .ini file under the setup_basemap header
-!hydromt build wflow "./wflow_test_base" -r "{'subbasin': [12.2051, 45.8331], 'strord': 4, 'bounds': [11.70, 45.35, 12.95, 46.70]}" -v
+!hydromt build wflow "./wflow_test_base" -r "{'subbasin': [12.2051, 45.8331], 'strord': 4, 'bounds': [11.70, 45.35, 12.95, 46.70]}" -v -d artifact_data
-2023-07-25 13:33:27,526 - build - log - INFO - HydroMT version: 0.8.1.dev0
-2023-07-25 13:33:27,526 - build - main - INFO - Building instance of wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_base.
-2023-07-25 13:33:27,526 - build - main - INFO - User settings:
-2023-07-25 13:33:27,547 - build - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
-2023-07-25 13:33:27,548 - build - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
-2023-07-25 13:33:27,561 - build - model_api - INFO - setup_basemaps.region: {'subbasin': [12.2051, 45.8331], 'strord': 4, 'bounds': [11.7, 45.35, 12.95, 46.7]}
-2023-07-25 13:33:27,561 - build - model_api - INFO - setup_basemaps.res: 0.008333333333333333
-2023-07-25 13:33:27,561 - build - model_api - INFO - setup_basemaps.hydrography_fn: merit_hydro
-2023-07-25 13:33:27,561 - build - model_api - INFO - setup_basemaps.basin_index_fn: merit_hydro_index
-2023-07-25 13:33:27,561 - build - model_api - INFO - setup_basemaps.upscale_method: ihu
-2023-07-25 13:33:27,561 - build - wflow - INFO - Preparing base hydrography basemaps.
-2023-07-25 13:33:27,561 - build - main - ERROR - No such file or catalog key: merit_hydro
-Traceback (most recent call last):
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt/cli/main.py", line 207, in build
- mod.build(region, opt=opt)
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt/models/model_api.py", line 220, in build
- self._run_log_method(method, **kwargs)
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt/models/model_api.py", line 163, in _run_log_method
- return func(*args, **kwargs)
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/wflow.py", line 175, in setup_basemaps
- ds_org = self.data_catalog.get_rasterdataset(hydrography_fn)
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt/data_catalog.py", line 700, in get_rasterdataset
- raise FileNotFoundError(f"No such file or catalog key: {data_like}")
-FileNotFoundError: No such file or catalog key: merit_hydro
-Traceback (most recent call last):
- File "/usr/share/miniconda3/envs/hydromt-wflow/bin/hydromt", line 8, in <module>
- sys.exit(main())
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/click/core.py", line 1157, in __call__
- return self.main(*args, **kwargs)
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/click/core.py", line 1078, in main
- rv = self.invoke(ctx)
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/click/core.py", line 1688, in invoke
- return _process_result(sub_ctx.command.invoke(sub_ctx))
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/click/core.py", line 1434, in invoke
- return ctx.invoke(self.callback, **ctx.params)
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/click/core.py", line 783, in invoke
- return __callback(*args, **kwargs)
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/click/decorators.py", line 33, in new_func
- return f(get_current_context(), *args, **kwargs)
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt/cli/main.py", line 207, in build
- mod.build(region, opt=opt)
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt/models/model_api.py", line 220, in build
- self._run_log_method(method, **kwargs)
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt/models/model_api.py", line 163, in _run_log_method
- return func(*args, **kwargs)
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/wflow.py", line 175, in setup_basemaps
- ds_org = self.data_catalog.get_rasterdataset(hydrography_fn)
- File "/usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt/data_catalog.py", line 700, in get_rasterdataset
- raise FileNotFoundError(f"No such file or catalog key: {data_like}")
-FileNotFoundError: No such file or catalog key: merit_hydro
-
+2023-07-27 08:03:37,603 - build - log - INFO - HydroMT version: 0.8.1.dev0
+2023-07-27 08:03:37,604 - build - main - INFO - Building instance of wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_base.
+2023-07-27 08:03:37,604 - build - main - INFO - User settings:
+2023-07-27 08:03:37,729 - build - data_catalog - INFO - Reading data catalog artifact_data v0.0.8 from archive
+2023-07-27 08:03:39,654 - build - data_catalog - INFO - Parsing data catalog from /home/runner/.hydromt_data/artifact_data/v0.0.8/data_catalog.yml
+2023-07-27 08:03:39,731 - build - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
+2023-07-27 08:03:39,731 - build - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
+2023-07-27 08:03:39,744 - build - model_api - INFO - setup_basemaps.region: {'subbasin': [12.2051, 45.8331], 'strord': 4, 'bounds': [11.7, 45.35, 12.95, 46.7]}
+2023-07-27 08:03:39,745 - build - model_api - INFO - setup_basemaps.res: 0.008333333333333333
+2023-07-27 08:03:39,745 - build - model_api - INFO - setup_basemaps.hydrography_fn: merit_hydro
+2023-07-27 08:03:39,745 - build - model_api - INFO - setup_basemaps.basin_index_fn: merit_hydro_index
+2023-07-27 08:03:39,745 - build - model_api - INFO - setup_basemaps.upscale_method: ihu
+2023-07-27 08:03:39,745 - build - wflow - INFO - Preparing base hydrography basemaps.
+2023-07-27 08:03:39,745 - build - data_catalog - INFO - DataCatalog: Getting merit_hydro RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/merit_hydro/{variable}.tif
+2023-07-27 08:03:43,981 - build - basin_mask - INFO - subbasin bbox: [11.7750, 45.8042, 12.7450, 46.6900]
+2023-07-27 08:03:44,218 - build - basemaps - INFO - Upscale flow direction data: 10x, ihu method.
+2023-07-27 08:04:01,573 - build - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_base
+2023-07-27 08:04:01,576 - build - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_base/wflow_sbm.toml
+2023-07-27 08:04:01,605 - build - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_base/staticmaps.nc
+corrupted size vs. prev_size in fastbins
+Aborted (core dumped)
The example above means the following: run hydromt build with:
@@ -776,227 +746,226 @@
-2023-07-25 13:33:30,637 - build - log - DEBUG - Writing log messages to new file /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full/hydromt.log.
-2023-07-25 13:33:30,637 - build - log - INFO - HydroMT version: 0.8.1.dev0
-2023-07-25 13:33:30,637 - build - main - INFO - Building instance of wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full.
-2023-07-25 13:33:30,637 - build - main - INFO - User settings:
-2023-07-25 13:33:30,921 - build - data_catalog - INFO - Reading data catalog artifact_data v0.0.8 from archive
-2023-07-25 13:33:32,141 - build - data_catalog - DEBUG - Unpacking data from /home/runner/.hydromt_data/artifact_data/v0.0.8/data.tar.gz
-2023-07-25 13:33:33,045 - build - data_catalog - INFO - Parsing data catalog from /home/runner/.hydromt_data/artifact_data/v0.0.8/data_catalog.yml
-2023-07-25 13:33:33,120 - build - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
-2023-07-25 13:33:33,121 - build - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
-2023-07-25 13:33:33,134 - build - model_api - DEBUG - Setting model config options.
-2023-07-25 13:33:33,136 - build - model_api - DEBUG - Default config read from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow/wflow_sbm.toml
-2023-07-25 13:33:33,136 - build - model_api - INFO - setup_basemaps.region: {'subbasin': [12.2051, 45.8331], 'strord': 4, 'bounds': [11.7, 45.35, 12.95, 46.7]}
-2023-07-25 13:33:33,136 - build - model_api - INFO - setup_basemaps.res: 0.00833
-2023-07-25 13:33:33,136 - build - model_api - INFO - setup_basemaps.hydrography_fn: merit_hydro
-2023-07-25 13:33:33,136 - build - model_api - INFO - setup_basemaps.basin_index_fn: merit_hydro_index
-2023-07-25 13:33:33,136 - build - model_api - INFO - setup_basemaps.upscale_method: ihu
-2023-07-25 13:33:33,136 - build - wflow - INFO - Preparing base hydrography basemaps.
-2023-07-25 13:33:33,136 - build - data_catalog - INFO - DataCatalog: Getting merit_hydro RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/merit_hydro/{variable}.tif
-2023-07-25 13:33:33,277 - build - basin_mask - DEBUG - Parsed region (kind=subbasin): {'strord': 4, 'bounds': [11.7, 45.35, 12.95, 46.7], 'xy': [12.2051, 45.8331]}
-2023-07-25 13:33:37,391 - build - basin_mask - INFO - subbasin bbox: [11.7750, 45.8042, 12.7450, 46.6900]
-2023-07-25 13:33:37,492 - build - wflow - DEBUG - Adding basins vector to staticgeoms.
-2023-07-25 13:33:37,492 - build - basemaps - DEBUG - Mask in dataset assumed to represent subbasins.
-2023-07-25 13:33:37,493 - build - basemaps - DEBUG - (Sub)basin at original resolution has 664756 cells.
-2023-07-25 13:33:37,585 - build - basemaps - DEBUG - Burn subbasin outlet in upstream area data.
-2023-07-25 13:33:37,629 - build - basemaps - INFO - Upscale flow direction data: 10x, ihu method.
-2023-07-25 13:33:54,360 - build - basemaps - DEBUG - Derive stream order.
-2023-07-25 13:33:54,572 - build - basemaps - DEBUG - Map shape: (106, 116); active cells: 6637.
-2023-07-25 13:33:54,572 - build - basemaps - DEBUG - Outlet coordinates (1/1): (12.20750,45.83583).
-2023-07-25 13:33:54,672 - build - wflow - DEBUG - Adding region vector to staticgeoms.
-2023-07-25 13:33:54,677 - build - model_api - INFO - setup_rivers.hydrography_fn: merit_hydro
-2023-07-25 13:33:54,677 - build - model_api - INFO - setup_rivers.river_geom_fn: rivers_lin2019_v1
-2023-07-25 13:33:54,677 - build - model_api - INFO - setup_rivers.river_upa: 30
-2023-07-25 13:33:54,677 - build - model_api - INFO - setup_rivers.rivdph_method: powlaw
-2023-07-25 13:33:54,677 - build - model_api - INFO - setup_rivers.slope_len: 2000
-2023-07-25 13:33:54,677 - build - model_api - INFO - setup_rivers.min_rivlen_ratio: 0.0
-2023-07-25 13:33:54,677 - build - model_api - INFO - setup_rivers.min_rivdph: 1
-2023-07-25 13:33:54,677 - build - model_api - INFO - setup_rivers.min_rivwth: 30
-2023-07-25 13:33:54,677 - build - model_api - INFO - setup_rivers.smooth_len: 5000
-2023-07-25 13:33:54,677 - build - model_api - INFO - setup_rivers.rivman_mapping_fn: roughness_river_mapping_default
-2023-07-25 13:33:54,677 - build - model_api - INFO - setup_rivers.elevtn_map: wflow_dem
-2023-07-25 13:33:54,677 - build - model_api - INFO - setup_rivers.river_routing: kinematic-wave
-2023-07-25 13:33:54,677 - build - model_api - INFO - setup_rivers.connectivity: 8
-2023-07-25 13:33:54,677 - build - wflow - INFO - Preparing river maps.
-2023-07-25 13:33:54,678 - build - data_catalog - INFO - DataCatalog: Getting merit_hydro RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/merit_hydro/{variable}.tif
-2023-07-25 13:33:54,802 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
-2023-07-25 13:33:54,817 - build - river - DEBUG - Set river mask (min uparea: 30 km2) and prepare flow dirs.
-2023-07-25 13:33:54,970 - build - river - DEBUG - Derive river length.
-2023-07-25 13:34:01,771 - build - river - DEBUG - Derive river slope.
-2023-07-25 13:34:02,489 - build - river - DEBUG - Derive rivwth from hydrography dataset.
-2023-07-25 13:34:02,500 - build - data_catalog - INFO - DataCatalog: Getting roughness_river_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow/N_river_mapping.csv
-2023-07-25 13:34:02,500 - build - dataframe - INFO - DataFrame: Read csv data.
-2023-07-25 13:34:02,509 - build - landuse - INFO - Deriving N_River using average resampling (nodata=-999.0).
-2023-07-25 13:34:02,521 - build - data_catalog - INFO - DataCatalog: Getting rivers_lin2019_v1 GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/rivers_lin2019_v1.gpkg
-2023-07-25 13:34:02,522 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.778, 45.807, 12.745, 46.690].
-2023-07-25 13:34:02,786 - build - river - DEBUG - Derive ['rivwth', 'qbankfull'] from shapefile.
-2023-07-25 13:34:02,873 - build - river - DEBUG - Valid for 381/655 river cells (max dist: 392 m).
-2023-07-25 13:34:06,434 - build - wflow - DEBUG - Adding rivers vector to staticgeoms.
-2023-07-25 13:34:07,266 - build - model_api - INFO - setup_reservoirs.reservoirs_fn: hydro_reservoirs
-2023-07-25 13:34:07,266 - build - model_api - INFO - setup_reservoirs.timeseries_fn: gww
-2023-07-25 13:34:07,266 - build - model_api - INFO - setup_reservoirs.min_area: 1.0
-2023-07-25 13:34:07,266 - build - wflow - INFO - Preparing reservoir maps.
-2023-07-25 13:34:07,266 - build - data_catalog - INFO - DataCatalog: Getting hydro_reservoirs GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/hydro_reservoirs.gpkg
-2023-07-25 13:34:07,269 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
-2023-07-25 13:34:07,302 - build - geodataframe - DEBUG - GeoDataFrame: Convert units for 5 columns.
-2023-07-25 13:34:07,307 - build - wflow - WARNING - No reservoirs of sufficient size found within region! Skipping reservoir procedures!
-2023-07-25 13:34:07,308 - build - model_api - INFO - setup_lakes.lakes_fn: hydro_lakes
-2023-07-25 13:34:07,308 - build - model_api - INFO - setup_lakes.rating_curve_fns: None
-2023-07-25 13:34:07,308 - build - model_api - INFO - setup_lakes.min_area: 10.0
-2023-07-25 13:34:07,308 - build - model_api - INFO - setup_lakes.add_maxstorage: False
-2023-07-25 13:34:07,308 - build - wflow - INFO - Preparing lake maps.
-2023-07-25 13:34:07,308 - build - data_catalog - INFO - DataCatalog: Getting hydro_lakes GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/hydro_lakes.gpkg
-2023-07-25 13:34:07,311 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
-2023-07-25 13:34:07,336 - build - geodataframe - DEBUG - GeoDataFrame: Convert units for 1 columns.
-2023-07-25 13:34:07,339 - build - wflow - WARNING - No lakes of sufficient size found within region! Skipping lake procedures!
-2023-07-25 13:34:07,339 - build - model_api - INFO - setup_glaciers.glaciers_fn: rgi
-2023-07-25 13:34:07,339 - build - model_api - INFO - setup_glaciers.min_area: 1.0
-2023-07-25 13:34:07,339 - build - wflow - INFO - Preparing glacier maps.
-2023-07-25 13:34:07,339 - build - data_catalog - INFO - DataCatalog: Getting rgi GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/rgi.gpkg
-2023-07-25 13:34:07,342 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
-2023-07-25 13:34:07,377 - build - wflow - INFO - 1 glaciers of sufficient size found within region.
-2023-07-25 13:34:07,393 - build - glaciers - DEBUG - Creating vector grid for calculating glacier fraction and storage per grid cell
-2023-07-25 13:34:07,740 - build - glaciers - DEBUG - Setting glacierfrac and store values per glacier.
-2023-07-25 13:34:09,431 - build - model_api - INFO - setup_lulcmaps.lulc_fn: globcover
-2023-07-25 13:34:09,431 - build - model_api - INFO - setup_lulcmaps.lulc_mapping_fn: None
-2023-07-25 13:34:09,431 - build - model_api - INFO - setup_lulcmaps.lulc_vars: ['landuse', 'Kext', 'N', 'PathFrac', 'RootingDepth', 'Sl', 'Swood', 'WaterFrac']
-2023-07-25 13:34:09,431 - build - wflow - INFO - Preparing LULC parameter maps.
-2023-07-25 13:34:09,431 - build - data_catalog - INFO - DataCatalog: Getting globcover RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/globcover.tif
-2023-07-25 13:34:09,450 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
-2023-07-25 13:34:09,452 - build - data_catalog - INFO - DataCatalog: Getting globcover_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/lulc/globcover_mapping.csv
-2023-07-25 13:34:09,452 - build - dataframe - INFO - DataFrame: Read csv data.
-2023-07-25 13:34:09,461 - build - landuse - INFO - Deriving landuse using nearest resampling (nodata=230).
-2023-07-25 13:34:09,524 - build - landuse - INFO - Deriving Kext using average resampling (nodata=-999.0).
-2023-07-25 13:34:09,579 - build - landuse - INFO - Deriving N using average resampling (nodata=-999.0).
-2023-07-25 13:34:09,633 - build - landuse - INFO - Deriving PathFrac using average resampling (nodata=-999.0).
-2023-07-25 13:34:09,688 - build - landuse - INFO - Deriving RootingDepth using average resampling (nodata=-999.0).
-2023-07-25 13:34:09,743 - build - landuse - INFO - Deriving Sl using average resampling (nodata=-999.0).
-2023-07-25 13:34:09,799 - build - landuse - INFO - Deriving Swood using average resampling (nodata=-999.0).
-2023-07-25 13:34:09,854 - build - landuse - INFO - Deriving WaterFrac using average resampling (nodata=-999.0).
-2023-07-25 13:34:09,917 - build - model_api - INFO - setup_laimaps.lai_fn: modis_lai
-2023-07-25 13:34:09,917 - build - wflow - INFO - Preparing LAI maps.
-2023-07-25 13:34:09,918 - build - data_catalog - INFO - DataCatalog: Getting modis_lai RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/modis_lai.nc
-2023-07-25 13:34:10,000 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
-2023-07-25 13:34:10,001 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 1 variables.
-2023-07-25 13:34:10,008 - build - landuse - INFO - Deriving LAI using average resampling (nodata=nan).
-2023-07-25 13:34:10,076 - build - model_api - INFO - setup_soilmaps.soil_fn: soilgrids
-2023-07-25 13:34:10,077 - build - model_api - INFO - setup_soilmaps.ptf_ksatver: brakensiek
-2023-07-25 13:34:10,077 - build - wflow - INFO - Preparing soil parameter maps.
-2023-07-25 13:34:10,077 - build - data_catalog - INFO - DataCatalog: Getting soilgrids RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/soilgrids/{variable}.tif
-2023-07-25 13:34:10,650 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
-2023-07-25 13:34:10,662 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 21 variables.
-2023-07-25 13:34:10,979 - build - soilgrids - INFO - calculate and resample thetaS
-2023-07-25 13:34:11,158 - build - soilgrids - INFO - calculate and resample thetaR
-2023-07-25 13:34:11,381 - build - soilgrids - INFO - calculate and resample KsatVer
-2023-07-25 13:34:11,431 - build - soilgrids - INFO - calculate and resample pore size distribution index
-2023-07-25 13:34:11,526 - build - soilgrids - INFO - fit z - log(KsatVer) with numpy linalg regression (y = b*x) -> M_
-2023-07-25 13:34:12,128 - build - soilgrids - INFO - fit zi - Ksat with curve_fit (scipy.optimize) -> M
-2023-07-25 13:34:16,451 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for thetaS
-2023-07-25 13:34:16,625 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for thetaR
-2023-07-25 13:34:16,761 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for SoilThickness
+2023-07-27 08:04:20,709 - build - log - DEBUG - Writing log messages to new file /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full/hydromt.log.
+2023-07-27 08:04:20,709 - build - log - INFO - HydroMT version: 0.8.1.dev0
+2023-07-27 08:04:20,709 - build - main - INFO - Building instance of wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full.
+2023-07-27 08:04:20,709 - build - main - INFO - User settings:
+2023-07-27 08:04:20,781 - build - data_catalog - INFO - Reading data catalog artifact_data v0.0.8 from archive
+2023-07-27 08:04:20,781 - build - data_catalog - INFO - Parsing data catalog from /home/runner/.hydromt_data/artifact_data/v0.0.8/data_catalog.yml
+2023-07-27 08:04:20,858 - build - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
+2023-07-27 08:04:20,858 - build - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
+2023-07-27 08:04:20,871 - build - model_api - DEBUG - Setting model config options.
+2023-07-27 08:04:20,873 - build - model_api - DEBUG - Default config read from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow/wflow_sbm.toml
+2023-07-27 08:04:20,873 - build - model_api - INFO - setup_basemaps.region: {'subbasin': [12.2051, 45.8331], 'strord': 4, 'bounds': [11.7, 45.35, 12.95, 46.7]}
+2023-07-27 08:04:20,873 - build - model_api - INFO - setup_basemaps.res: 0.00833
+2023-07-27 08:04:20,873 - build - model_api - INFO - setup_basemaps.hydrography_fn: merit_hydro
+2023-07-27 08:04:20,873 - build - model_api - INFO - setup_basemaps.basin_index_fn: merit_hydro_index
+2023-07-27 08:04:20,873 - build - model_api - INFO - setup_basemaps.upscale_method: ihu
+2023-07-27 08:04:20,873 - build - wflow - INFO - Preparing base hydrography basemaps.
+2023-07-27 08:04:20,873 - build - data_catalog - INFO - DataCatalog: Getting merit_hydro RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/merit_hydro/{variable}.tif
+2023-07-27 08:04:21,017 - build - basin_mask - DEBUG - Parsed region (kind=subbasin): {'strord': 4, 'bounds': [11.7, 45.35, 12.95, 46.7], 'xy': [12.2051, 45.8331]}
+2023-07-27 08:04:25,100 - build - basin_mask - INFO - subbasin bbox: [11.7750, 45.8042, 12.7450, 46.6900]
+2023-07-27 08:04:25,201 - build - wflow - DEBUG - Adding basins vector to staticgeoms.
+2023-07-27 08:04:25,201 - build - basemaps - DEBUG - Mask in dataset assumed to represent subbasins.
+2023-07-27 08:04:25,202 - build - basemaps - DEBUG - (Sub)basin at original resolution has 664756 cells.
+2023-07-27 08:04:25,294 - build - basemaps - DEBUG - Burn subbasin outlet in upstream area data.
+2023-07-27 08:04:25,337 - build - basemaps - INFO - Upscale flow direction data: 10x, ihu method.
+2023-07-27 08:04:42,137 - build - basemaps - DEBUG - Derive stream order.
+2023-07-27 08:04:42,350 - build - basemaps - DEBUG - Map shape: (106, 116); active cells: 6637.
+2023-07-27 08:04:42,351 - build - basemaps - DEBUG - Outlet coordinates (1/1): (12.20750,45.83583).
+2023-07-27 08:04:42,451 - build - wflow - DEBUG - Adding region vector to staticgeoms.
+2023-07-27 08:04:42,455 - build - model_api - INFO - setup_rivers.hydrography_fn: merit_hydro
+2023-07-27 08:04:42,456 - build - model_api - INFO - setup_rivers.river_geom_fn: rivers_lin2019_v1
+2023-07-27 08:04:42,456 - build - model_api - INFO - setup_rivers.river_upa: 30
+2023-07-27 08:04:42,456 - build - model_api - INFO - setup_rivers.rivdph_method: powlaw
+2023-07-27 08:04:42,456 - build - model_api - INFO - setup_rivers.slope_len: 2000
+2023-07-27 08:04:42,456 - build - model_api - INFO - setup_rivers.min_rivlen_ratio: 0.0
+2023-07-27 08:04:42,456 - build - model_api - INFO - setup_rivers.min_rivdph: 1
+2023-07-27 08:04:42,456 - build - model_api - INFO - setup_rivers.min_rivwth: 30
+2023-07-27 08:04:42,456 - build - model_api - INFO - setup_rivers.smooth_len: 5000
+2023-07-27 08:04:42,456 - build - model_api - INFO - setup_rivers.rivman_mapping_fn: roughness_river_mapping_default
+2023-07-27 08:04:42,456 - build - model_api - INFO - setup_rivers.elevtn_map: wflow_dem
+2023-07-27 08:04:42,456 - build - model_api - INFO - setup_rivers.river_routing: kinematic-wave
+2023-07-27 08:04:42,456 - build - model_api - INFO - setup_rivers.connectivity: 8
+2023-07-27 08:04:42,456 - build - wflow - INFO - Preparing river maps.
+2023-07-27 08:04:42,456 - build - data_catalog - INFO - DataCatalog: Getting merit_hydro RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/merit_hydro/{variable}.tif
+2023-07-27 08:04:42,581 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
+2023-07-27 08:04:42,597 - build - river - DEBUG - Set river mask (min uparea: 30 km2) and prepare flow dirs.
+2023-07-27 08:04:42,750 - build - river - DEBUG - Derive river length.
+2023-07-27 08:04:49,321 - build - river - DEBUG - Derive river slope.
+2023-07-27 08:04:50,037 - build - river - DEBUG - Derive rivwth from hydrography dataset.
+2023-07-27 08:04:50,049 - build - data_catalog - INFO - DataCatalog: Getting roughness_river_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow/N_river_mapping.csv
+2023-07-27 08:04:50,050 - build - dataframe - INFO - DataFrame: Read csv data.
+2023-07-27 08:04:50,058 - build - landuse - INFO - Deriving N_River using average resampling (nodata=-999.0).
+2023-07-27 08:04:50,070 - build - data_catalog - INFO - DataCatalog: Getting rivers_lin2019_v1 GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/rivers_lin2019_v1.gpkg
+2023-07-27 08:04:50,071 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.778, 45.807, 12.745, 46.690].
+2023-07-27 08:04:50,339 - build - river - DEBUG - Derive ['rivwth', 'qbankfull'] from shapefile.
+2023-07-27 08:04:50,427 - build - river - DEBUG - Valid for 381/655 river cells (max dist: 392 m).
+2023-07-27 08:04:54,018 - build - wflow - DEBUG - Adding rivers vector to staticgeoms.
+2023-07-27 08:04:54,858 - build - model_api - INFO - setup_reservoirs.reservoirs_fn: hydro_reservoirs
+2023-07-27 08:04:54,858 - build - model_api - INFO - setup_reservoirs.timeseries_fn: gww
+2023-07-27 08:04:54,858 - build - model_api - INFO - setup_reservoirs.min_area: 1.0
+2023-07-27 08:04:54,859 - build - wflow - INFO - Preparing reservoir maps.
+2023-07-27 08:04:54,859 - build - data_catalog - INFO - DataCatalog: Getting hydro_reservoirs GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/hydro_reservoirs.gpkg
+2023-07-27 08:04:54,862 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
+2023-07-27 08:04:54,894 - build - geodataframe - DEBUG - GeoDataFrame: Convert units for 5 columns.
+2023-07-27 08:04:54,900 - build - wflow - WARNING - No reservoirs of sufficient size found within region! Skipping reservoir procedures!
+2023-07-27 08:04:54,900 - build - model_api - INFO - setup_lakes.lakes_fn: hydro_lakes
+2023-07-27 08:04:54,900 - build - model_api - INFO - setup_lakes.rating_curve_fns: None
+2023-07-27 08:04:54,900 - build - model_api - INFO - setup_lakes.min_area: 10.0
+2023-07-27 08:04:54,900 - build - model_api - INFO - setup_lakes.add_maxstorage: False
+2023-07-27 08:04:54,900 - build - wflow - INFO - Preparing lake maps.
+2023-07-27 08:04:54,900 - build - data_catalog - INFO - DataCatalog: Getting hydro_lakes GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/hydro_lakes.gpkg
+2023-07-27 08:04:54,903 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
+2023-07-27 08:04:54,927 - build - geodataframe - DEBUG - GeoDataFrame: Convert units for 1 columns.
+2023-07-27 08:04:54,931 - build - wflow - WARNING - No lakes of sufficient size found within region! Skipping lake procedures!
+2023-07-27 08:04:54,931 - build - model_api - INFO - setup_glaciers.glaciers_fn: rgi
+2023-07-27 08:04:54,931 - build - model_api - INFO - setup_glaciers.min_area: 1.0
+2023-07-27 08:04:54,931 - build - wflow - INFO - Preparing glacier maps.
+2023-07-27 08:04:54,931 - build - data_catalog - INFO - DataCatalog: Getting rgi GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/rgi.gpkg
+2023-07-27 08:04:54,934 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
+2023-07-27 08:04:54,970 - build - wflow - INFO - 1 glaciers of sufficient size found within region.
+2023-07-27 08:04:54,985 - build - glaciers - DEBUG - Creating vector grid for calculating glacier fraction and storage per grid cell
+2023-07-27 08:04:55,350 - build - glaciers - DEBUG - Setting glacierfrac and store values per glacier.
+2023-07-27 08:04:57,020 - build - model_api - INFO - setup_lulcmaps.lulc_fn: globcover
+2023-07-27 08:04:57,020 - build - model_api - INFO - setup_lulcmaps.lulc_mapping_fn: None
+2023-07-27 08:04:57,020 - build - model_api - INFO - setup_lulcmaps.lulc_vars: ['landuse', 'Kext', 'N', 'PathFrac', 'RootingDepth', 'Sl', 'Swood', 'WaterFrac']
+2023-07-27 08:04:57,020 - build - wflow - INFO - Preparing LULC parameter maps.
+2023-07-27 08:04:57,020 - build - data_catalog - INFO - DataCatalog: Getting globcover RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/globcover.tif
+2023-07-27 08:04:57,039 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
+2023-07-27 08:04:57,041 - build - data_catalog - INFO - DataCatalog: Getting globcover_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/lulc/globcover_mapping.csv
+2023-07-27 08:04:57,041 - build - dataframe - INFO - DataFrame: Read csv data.
+2023-07-27 08:04:57,050 - build - landuse - INFO - Deriving landuse using nearest resampling (nodata=230).
+2023-07-27 08:04:57,115 - build - landuse - INFO - Deriving Kext using average resampling (nodata=-999.0).
+2023-07-27 08:04:57,171 - build - landuse - INFO - Deriving N using average resampling (nodata=-999.0).
+2023-07-27 08:04:57,227 - build - landuse - INFO - Deriving PathFrac using average resampling (nodata=-999.0).
+2023-07-27 08:04:57,282 - build - landuse - INFO - Deriving RootingDepth using average resampling (nodata=-999.0).
+2023-07-27 08:04:57,337 - build - landuse - INFO - Deriving Sl using average resampling (nodata=-999.0).
+2023-07-27 08:04:57,392 - build - landuse - INFO - Deriving Swood using average resampling (nodata=-999.0).
+2023-07-27 08:04:57,446 - build - landuse - INFO - Deriving WaterFrac using average resampling (nodata=-999.0).
+2023-07-27 08:04:57,509 - build - model_api - INFO - setup_laimaps.lai_fn: modis_lai
+2023-07-27 08:04:57,509 - build - wflow - INFO - Preparing LAI maps.
+2023-07-27 08:04:57,509 - build - data_catalog - INFO - DataCatalog: Getting modis_lai RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/modis_lai.nc
+2023-07-27 08:04:57,592 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
+2023-07-27 08:04:57,594 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 1 variables.
+2023-07-27 08:04:57,601 - build - landuse - INFO - Deriving LAI using average resampling (nodata=nan).
+2023-07-27 08:04:57,668 - build - model_api - INFO - setup_soilmaps.soil_fn: soilgrids
+2023-07-27 08:04:57,668 - build - model_api - INFO - setup_soilmaps.ptf_ksatver: brakensiek
+2023-07-27 08:04:57,668 - build - wflow - INFO - Preparing soil parameter maps.
+2023-07-27 08:04:57,669 - build - data_catalog - INFO - DataCatalog: Getting soilgrids RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/soilgrids/{variable}.tif
+2023-07-27 08:04:58,244 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
+2023-07-27 08:04:58,256 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 21 variables.
+2023-07-27 08:04:58,574 - build - soilgrids - INFO - calculate and resample thetaS
+2023-07-27 08:04:58,753 - build - soilgrids - INFO - calculate and resample thetaR
+2023-07-27 08:04:58,976 - build - soilgrids - INFO - calculate and resample KsatVer
+2023-07-27 08:04:59,027 - build - soilgrids - INFO - calculate and resample pore size distribution index
+2023-07-27 08:04:59,123 - build - soilgrids - INFO - fit z - log(KsatVer) with numpy linalg regression (y = b*x) -> M_
+2023-07-27 08:04:59,702 - build - soilgrids - INFO - fit zi - Ksat with curve_fit (scipy.optimize) -> M
+2023-07-27 08:05:03,738 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for thetaS
+2023-07-27 08:05:03,917 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for thetaR
+2023-07-27 08:05:04,063 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for SoilThickness
No numerical nodata value found, skipping set_nodata
-2023-07-25 13:34:16,785 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for SoilMinThickness
+2023-07-27 08:05:04,086 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for SoilMinThickness
No numerical nodata value found, skipping set_nodata
-2023-07-25 13:34:16,803 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for c
+2023-07-27 08:05:04,108 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for c
No numerical nodata value found, skipping set_nodata
-2023-07-25 13:34:17,008 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer
-2023-07-25 13:34:17,063 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_0.0cm
-2023-07-25 13:34:17,118 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_5.0cm
-2023-07-25 13:34:17,175 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_15.0cm
-2023-07-25 13:34:17,233 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_30.0cm
-2023-07-25 13:34:17,288 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_60.0cm
-2023-07-25 13:34:17,344 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_100.0cm
-2023-07-25 13:34:17,402 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_200.0cm
-2023-07-25 13:34:17,455 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for M_original_
+2023-07-27 08:05:04,317 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer
+2023-07-27 08:05:04,371 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_0.0cm
+2023-07-27 08:05:04,424 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_5.0cm
+2023-07-27 08:05:04,477 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_15.0cm
+2023-07-27 08:05:04,531 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_30.0cm
+2023-07-27 08:05:04,586 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_60.0cm
+2023-07-27 08:05:04,643 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_100.0cm
+2023-07-27 08:05:04,696 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for KsatVer_200.0cm
+2023-07-27 08:05:04,749 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for M_original_
No numerical nodata value found, skipping set_nodata
-2023-07-25 13:34:17,654 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for M_
+2023-07-27 08:05:04,957 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for M_
No numerical nodata value found, skipping set_nodata
-2023-07-25 13:34:17,850 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for f_
+2023-07-27 08:05:05,149 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for f_
No numerical nodata value found, skipping set_nodata
-2023-07-25 13:34:18,046 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for M_original
+2023-07-27 08:05:05,336 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for M_original
No numerical nodata value found, skipping set_nodata
-2023-07-25 13:34:18,238 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for M
+2023-07-27 08:05:05,525 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for M
No numerical nodata value found, skipping set_nodata
-2023-07-25 13:34:18,431 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for f
+2023-07-27 08:05:05,713 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for f
No numerical nodata value found, skipping set_nodata
-2023-07-25 13:34:18,616 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for wflow_soil
-2023-07-25 13:34:18,747 - build - model_api - INFO - setup_outlets.river_only: True
-2023-07-25 13:34:18,747 - build - model_api - INFO - setup_outlets.toml_output: csv
-2023-07-25 13:34:18,747 - build - model_api - INFO - setup_outlets.gauge_toml_header: ['Q']
-2023-07-25 13:34:18,747 - build - model_api - INFO - setup_outlets.gauge_toml_param: ['lateral.river.q_av']
-2023-07-25 13:34:18,747 - build - wflow - INFO - Gauges locations set based on river outlets.
-2023-07-25 13:34:18,754 - build - wflow - INFO - Gauges map based on catchment river outlets added.
-2023-07-25 13:34:18,755 - build - wflow - INFO - Adding ['lateral.river.q_av'] to csv section of toml.
-2023-07-25 13:34:18,755 - build - model_api - INFO - setup_gauges.gauges_fn: grdc
-2023-07-25 13:34:18,755 - build - model_api - INFO - setup_gauges.index_col: None
-2023-07-25 13:34:18,755 - build - model_api - INFO - setup_gauges.snap_to_river: True
-2023-07-25 13:34:18,755 - build - model_api - INFO - setup_gauges.mask: None
-2023-07-25 13:34:18,755 - build - model_api - INFO - setup_gauges.snap_uparea: False
-2023-07-25 13:34:18,755 - build - model_api - INFO - setup_gauges.max_dist: 10000.0
-2023-07-25 13:34:18,755 - build - model_api - INFO - setup_gauges.wdw: 3
-2023-07-25 13:34:18,755 - build - model_api - INFO - setup_gauges.rel_error: 0.05
-2023-07-25 13:34:18,755 - build - model_api - INFO - setup_gauges.derive_subcatch: False
-2023-07-25 13:34:18,755 - build - model_api - INFO - setup_gauges.basename: None
-2023-07-25 13:34:18,755 - build - model_api - INFO - setup_gauges.toml_output: csv
-2023-07-25 13:34:18,755 - build - model_api - INFO - setup_gauges.gauge_toml_header: ['Q', 'P']
-2023-07-25 13:34:18,755 - build - model_api - INFO - setup_gauges.gauge_toml_param: ['lateral.river.q_av', 'vertical.precipitation']
-2023-07-25 13:34:18,755 - build - data_catalog - INFO - DataCatalog: Getting grdc GeoDataFrame csv data from /home/runner/.hydromt_data/artifact_data/v0.0.8/grdc.csv
-2023-07-25 13:34:18,758 - build - geodataframe - INFO - GeoDataFrame: Read csv data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
-2023-07-25 13:34:18,772 - build - wflow - INFO - 3 grdc gauge locations found within domain
-2023-07-25 13:34:19,237 - build - wflow - INFO - Adding ['lateral.river.q_av', 'vertical.precipitation'] to csv section of toml.
-2023-07-25 13:34:19,237 - build - model_api - INFO - setup_precip_forcing.precip_fn: era5
-2023-07-25 13:34:19,237 - build - model_api - INFO - setup_precip_forcing.precip_clim_fn: None
-2023-07-25 13:34:19,237 - build - model_api - INFO - setup_precip_forcing.chunksize: None
-2023-07-25 13:34:19,238 - build - data_catalog - INFO - DataCatalog: Getting era5 RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5.nc
-2023-07-25 13:34:19,257 - build - rasterdataset - DEBUG - RasterDataset: Shifting time labels with 86400 sec.
-2023-07-25 13:34:19,258 - build - rasterdataset - DEBUG - RasterDataset: Slicing time dim ('2010-01-01T00:00:00', '2010-03-31T00:00:00')
-2023-07-25 13:34:19,266 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
-2023-07-25 13:34:19,268 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 1 variables.
-2023-07-25 13:34:19,350 - build - model_api - INFO - setup_temp_pet_forcing.temp_pet_fn: era5
-2023-07-25 13:34:19,350 - build - model_api - INFO - setup_temp_pet_forcing.pet_method: debruin
-2023-07-25 13:34:19,350 - build - model_api - INFO - setup_temp_pet_forcing.press_correction: True
-2023-07-25 13:34:19,350 - build - model_api - INFO - setup_temp_pet_forcing.temp_correction: True
-2023-07-25 13:34:19,350 - build - model_api - INFO - setup_temp_pet_forcing.wind_correction: True
-2023-07-25 13:34:19,350 - build - model_api - INFO - setup_temp_pet_forcing.wind_altitude: 10
-2023-07-25 13:34:19,350 - build - model_api - INFO - setup_temp_pet_forcing.reproj_method: nearest_index
-2023-07-25 13:34:19,350 - build - model_api - INFO - setup_temp_pet_forcing.dem_forcing_fn: era5_orography
-2023-07-25 13:34:19,350 - build - model_api - INFO - setup_temp_pet_forcing.skip_pet: False
-2023-07-25 13:34:19,350 - build - model_api - INFO - setup_temp_pet_forcing.chunksize: None
-2023-07-25 13:34:19,351 - build - data_catalog - INFO - DataCatalog: Getting era5 RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5.nc
-2023-07-25 13:34:19,364 - build - rasterdataset - DEBUG - RasterDataset: Shifting time labels with 86400 sec.
-2023-07-25 13:34:19,366 - build - rasterdataset - DEBUG - RasterDataset: Slicing time dim ('2010-01-01T00:00:00', '2010-03-31T00:00:00')
-2023-07-25 13:34:19,374 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
-2023-07-25 13:34:19,376 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 4 variables.
-2023-07-25 13:34:19,404 - build - data_catalog - INFO - DataCatalog: Getting era5_orography RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5_orography.nc
-2023-07-25 13:34:19,419 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.625, 45.625, 12.875, 46.875] (epsg:4326))
-2023-07-25 13:34:19,420 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 1 variables.
-2023-07-25 13:34:19,689 - build - model_api - INFO - setup_constant_pars.dtype: float32
-2023-07-25 13:34:19,689 - build - model_api - INFO - setup_constant_pars.nodata: -999
-2023-07-25 13:34:19,689 - build - model_api - INFO - setup_constant_pars.KsatHorFrac: 100
-2023-07-25 13:34:19,689 - build - model_api - INFO - setup_constant_pars.Cfmax: 3.75653
-2023-07-25 13:34:19,689 - build - model_api - INFO - setup_constant_pars.cf_soil: 0.038
-2023-07-25 13:34:19,689 - build - model_api - INFO - setup_constant_pars.EoverR: 0.11
-2023-07-25 13:34:19,690 - build - model_api - INFO - setup_constant_pars.InfiltCapPath: 5
-2023-07-25 13:34:19,690 - build - model_api - INFO - setup_constant_pars.InfiltCapSoil: 600
-2023-07-25 13:34:19,690 - build - model_api - INFO - setup_constant_pars.MaxLeakage: 0
-2023-07-25 13:34:19,690 - build - model_api - INFO - setup_constant_pars.rootdistpar: -500
-2023-07-25 13:34:19,690 - build - model_api - INFO - setup_constant_pars.TT: 0
-2023-07-25 13:34:19,690 - build - model_api - INFO - setup_constant_pars.TTI: 2
-2023-07-25 13:34:19,690 - build - model_api - INFO - setup_constant_pars.TTM: 0
-2023-07-25 13:34:19,690 - build - model_api - INFO - setup_constant_pars.WHC: 0.1
-2023-07-25 13:34:19,690 - build - model_api - INFO - setup_constant_pars.G_Cfmax: 5.3
-2023-07-25 13:34:19,690 - build - model_api - INFO - setup_constant_pars.G_SIfrac: 0.002
-2023-07-25 13:34:19,690 - build - model_api - INFO - setup_constant_pars.G_TT: 1.3
-2023-07-25 13:34:19,725 - build - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full
-2023-07-25 13:34:19,740 - build - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full/wflow_sbm.toml
-2023-07-25 13:34:19,828 - build - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full/staticmaps.nc
-2023-07-25 13:34:20,139 - build - wflow - INFO - Writing model staticgeom to file.
-2023-07-25 13:34:20,296 - build - wflow - INFO - Write forcing file
-2023-07-25 13:34:20,304 - build - wflow - WARNING - Not all dates found in precip_fn changing starttime to 2010-02-02 00:00:00 and endtime to 2010-02-15 00:00:00 in the toml.
-2023-07-25 13:34:20,304 - build - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full/wflow_sbm.toml
-2023-07-25 13:34:20,319 - build - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full/inmaps-era5-2010.nc
-[########################################] | 100% Completed | 102.77 ms
+2023-07-27 08:05:05,899 - build - soilgrids - DEBUG - Interpolate nodata (NaN) values for wflow_soil
+2023-07-27 08:05:06,031 - build - model_api - INFO - setup_outlets.river_only: True
+2023-07-27 08:05:06,031 - build - model_api - INFO - setup_outlets.toml_output: csv
+2023-07-27 08:05:06,031 - build - model_api - INFO - setup_outlets.gauge_toml_header: ['Q']
+2023-07-27 08:05:06,031 - build - model_api - INFO - setup_outlets.gauge_toml_param: ['lateral.river.q_av']
+2023-07-27 08:05:06,031 - build - wflow - INFO - Gauges locations set based on river outlets.
+2023-07-27 08:05:06,038 - build - wflow - INFO - Gauges map based on catchment river outlets added.
+2023-07-27 08:05:06,039 - build - wflow - INFO - Adding ['lateral.river.q_av'] to csv section of toml.
+2023-07-27 08:05:06,039 - build - model_api - INFO - setup_gauges.gauges_fn: grdc
+2023-07-27 08:05:06,039 - build - model_api - INFO - setup_gauges.index_col: None
+2023-07-27 08:05:06,039 - build - model_api - INFO - setup_gauges.snap_to_river: True
+2023-07-27 08:05:06,039 - build - model_api - INFO - setup_gauges.mask: None
+2023-07-27 08:05:06,039 - build - model_api - INFO - setup_gauges.snap_uparea: False
+2023-07-27 08:05:06,039 - build - model_api - INFO - setup_gauges.max_dist: 10000.0
+2023-07-27 08:05:06,039 - build - model_api - INFO - setup_gauges.wdw: 3
+2023-07-27 08:05:06,039 - build - model_api - INFO - setup_gauges.rel_error: 0.05
+2023-07-27 08:05:06,039 - build - model_api - INFO - setup_gauges.derive_subcatch: False
+2023-07-27 08:05:06,039 - build - model_api - INFO - setup_gauges.basename: None
+2023-07-27 08:05:06,039 - build - model_api - INFO - setup_gauges.toml_output: csv
+2023-07-27 08:05:06,039 - build - model_api - INFO - setup_gauges.gauge_toml_header: ['Q', 'P']
+2023-07-27 08:05:06,039 - build - model_api - INFO - setup_gauges.gauge_toml_param: ['lateral.river.q_av', 'vertical.precipitation']
+2023-07-27 08:05:06,039 - build - data_catalog - INFO - DataCatalog: Getting grdc GeoDataFrame csv data from /home/runner/.hydromt_data/artifact_data/v0.0.8/grdc.csv
+2023-07-27 08:05:06,044 - build - geodataframe - INFO - GeoDataFrame: Read csv data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
+2023-07-27 08:05:06,058 - build - wflow - INFO - 3 grdc gauge locations found within domain
+2023-07-27 08:05:06,525 - build - wflow - INFO - Adding ['lateral.river.q_av', 'vertical.precipitation'] to csv section of toml.
+2023-07-27 08:05:06,526 - build - model_api - INFO - setup_precip_forcing.precip_fn: era5
+2023-07-27 08:05:06,526 - build - model_api - INFO - setup_precip_forcing.precip_clim_fn: None
+2023-07-27 08:05:06,526 - build - model_api - INFO - setup_precip_forcing.chunksize: None
+2023-07-27 08:05:06,526 - build - data_catalog - INFO - DataCatalog: Getting era5 RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5.nc
+2023-07-27 08:05:06,543 - build - rasterdataset - DEBUG - RasterDataset: Shifting time labels with 86400 sec.
+2023-07-27 08:05:06,545 - build - rasterdataset - DEBUG - RasterDataset: Slicing time dim ('2010-01-01T00:00:00', '2010-03-31T00:00:00')
+2023-07-27 08:05:06,553 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
+2023-07-27 08:05:06,554 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 1 variables.
+2023-07-27 08:05:06,639 - build - model_api - INFO - setup_temp_pet_forcing.temp_pet_fn: era5
+2023-07-27 08:05:06,639 - build - model_api - INFO - setup_temp_pet_forcing.pet_method: debruin
+2023-07-27 08:05:06,639 - build - model_api - INFO - setup_temp_pet_forcing.press_correction: True
+2023-07-27 08:05:06,639 - build - model_api - INFO - setup_temp_pet_forcing.temp_correction: True
+2023-07-27 08:05:06,639 - build - model_api - INFO - setup_temp_pet_forcing.wind_correction: True
+2023-07-27 08:05:06,639 - build - model_api - INFO - setup_temp_pet_forcing.wind_altitude: 10
+2023-07-27 08:05:06,639 - build - model_api - INFO - setup_temp_pet_forcing.reproj_method: nearest_index
+2023-07-27 08:05:06,639 - build - model_api - INFO - setup_temp_pet_forcing.dem_forcing_fn: era5_orography
+2023-07-27 08:05:06,640 - build - model_api - INFO - setup_temp_pet_forcing.skip_pet: False
+2023-07-27 08:05:06,640 - build - model_api - INFO - setup_temp_pet_forcing.chunksize: None
+2023-07-27 08:05:06,640 - build - data_catalog - INFO - DataCatalog: Getting era5 RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5.nc
+2023-07-27 08:05:06,654 - build - rasterdataset - DEBUG - RasterDataset: Shifting time labels with 86400 sec.
+2023-07-27 08:05:06,656 - build - rasterdataset - DEBUG - RasterDataset: Slicing time dim ('2010-01-01T00:00:00', '2010-03-31T00:00:00')
+2023-07-27 08:05:06,664 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
+2023-07-27 08:05:06,666 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 4 variables.
+2023-07-27 08:05:06,695 - build - data_catalog - INFO - DataCatalog: Getting era5_orography RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5_orography.nc
+2023-07-27 08:05:06,710 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.625, 45.625, 12.875, 46.875] (epsg:4326))
+2023-07-27 08:05:06,711 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 1 variables.
+2023-07-27 08:05:06,982 - build - model_api - INFO - setup_constant_pars.dtype: float32
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.nodata: -999
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.KsatHorFrac: 100
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.Cfmax: 3.75653
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.cf_soil: 0.038
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.EoverR: 0.11
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.InfiltCapPath: 5
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.InfiltCapSoil: 600
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.MaxLeakage: 0
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.rootdistpar: -500
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.TT: 0
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.TTI: 2
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.TTM: 0
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.WHC: 0.1
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.G_Cfmax: 5.3
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.G_SIfrac: 0.002
+2023-07-27 08:05:06,983 - build - model_api - INFO - setup_constant_pars.G_TT: 1.3
+2023-07-27 08:05:07,019 - build - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full
+2023-07-27 08:05:07,034 - build - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full/wflow_sbm.toml
+2023-07-27 08:05:07,122 - build - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full/staticmaps.nc
+2023-07-27 08:05:07,432 - build - wflow - INFO - Writing model staticgeom to file.
+2023-07-27 08:05:07,586 - build - wflow - INFO - Write forcing file
+2023-07-27 08:05:07,594 - build - wflow - WARNING - Not all dates found in precip_fn changing starttime to 2010-02-02 00:00:00 and endtime to 2010-02-15 00:00:00 in the toml.
+2023-07-27 08:05:07,594 - build - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full/wflow_sbm.toml
+2023-07-27 08:05:07,608 - build - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_full/inmaps-era5-2010.nc
+[########################################] | 100% Completed | 102.62 ms
malloc(): unsorted double linked list corrupted
Aborted (core dumped)
-2023-07-25 13:34:53,450 - build - log - DEBUG - Writing log messages to new file /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_sediment/hydromt.log.
-2023-07-25 13:34:53,450 - build - log - INFO - HydroMT version: 0.8.1.dev0
-2023-07-25 13:34:53,450 - build - main - INFO - Building instance of wflow_sediment model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_sediment.
-2023-07-25 13:34:53,450 - build - main - INFO - User settings:
-2023-07-25 13:34:53,531 - build - data_catalog - INFO - Reading data catalog artifact_data v0.0.8 from archive
-2023-07-25 13:34:53,531 - build - data_catalog - INFO - Parsing data catalog from /home/runner/.hydromt_data/artifact_data/v0.0.8/data_catalog.yml
-2023-07-25 13:34:53,607 - build - model_api - INFO - Initializing wflow_sediment model from hydromt_wflow (v0.2.2.dev0).
-2023-07-25 13:34:53,607 - build - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
-2023-07-25 13:34:53,620 - build - model_api - DEBUG - Setting model config options.
-2023-07-25 13:34:53,622 - build - model_api - DEBUG - Default config read from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow_sediment/wflow_sediment.toml
-2023-07-25 13:34:53,622 - build - model_api - INFO - setup_basemaps.region: {'subbasin': [12.2051, 45.8331], 'strord': 4, 'bounds': [11.7, 45.35, 12.95, 46.7]}
-2023-07-25 13:34:53,622 - build - model_api - INFO - setup_basemaps.res: 0.00833
-2023-07-25 13:34:53,623 - build - model_api - INFO - setup_basemaps.hydrography_fn: merit_hydro
-2023-07-25 13:34:53,623 - build - model_api - INFO - setup_basemaps.basin_index_fn: merit_hydro_index
-2023-07-25 13:34:53,623 - build - model_api - INFO - setup_basemaps.upscale_method: ihu
-2023-07-25 13:34:53,623 - build - wflow - INFO - Preparing base hydrography basemaps.
-2023-07-25 13:34:53,623 - build - data_catalog - INFO - DataCatalog: Getting merit_hydro RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/merit_hydro/{variable}.tif
-2023-07-25 13:34:53,764 - build - basin_mask - DEBUG - Parsed region (kind=subbasin): {'strord': 4, 'bounds': [11.7, 45.35, 12.95, 46.7], 'xy': [12.2051, 45.8331]}
-2023-07-25 13:34:57,905 - build - basin_mask - INFO - subbasin bbox: [11.7750, 45.8042, 12.7450, 46.6900]
-2023-07-25 13:34:58,008 - build - wflow - DEBUG - Adding basins vector to staticgeoms.
-2023-07-25 13:34:58,008 - build - basemaps - DEBUG - Mask in dataset assumed to represent subbasins.
-2023-07-25 13:34:58,009 - build - basemaps - DEBUG - (Sub)basin at original resolution has 664756 cells.
-2023-07-25 13:34:58,101 - build - basemaps - DEBUG - Burn subbasin outlet in upstream area data.
-2023-07-25 13:34:58,146 - build - basemaps - INFO - Upscale flow direction data: 10x, ihu method.
-2023-07-25 13:35:15,298 - build - basemaps - DEBUG - Derive stream order.
-2023-07-25 13:35:15,512 - build - basemaps - DEBUG - Map shape: (106, 116); active cells: 6637.
-2023-07-25 13:35:15,512 - build - basemaps - DEBUG - Outlet coordinates (1/1): (12.20750,45.83583).
-2023-07-25 13:35:15,612 - build - wflow - DEBUG - Adding region vector to staticgeoms.
-2023-07-25 13:35:15,617 - build - model_api - INFO - setup_rivers.args: ()
-2023-07-25 13:35:15,617 - build - model_api - INFO - setup_rivers.hydrography_fn: merit_hydro
-2023-07-25 13:35:15,617 - build - model_api - INFO - setup_rivers.river_geom_fn: rivers_lin2019_v1
-2023-07-25 13:35:15,617 - build - model_api - INFO - setup_rivers.river_upa: 30
-2023-07-25 13:35:15,617 - build - model_api - INFO - setup_rivers.rivdph_method: powlaw
-2023-07-25 13:35:15,617 - build - model_api - INFO - setup_rivers.min_rivdph: 1
-2023-07-25 13:35:15,617 - build - model_api - INFO - setup_rivers.min_rivwth: 30
-2023-07-25 13:35:15,617 - build - model_api - INFO - setup_rivers.slope_len: 2000
-2023-07-25 13:35:15,617 - build - model_api - INFO - setup_rivers.smooth_len: 5000
-2023-07-25 13:35:15,617 - build - wflow - INFO - Preparing river maps.
-2023-07-25 13:35:15,618 - build - data_catalog - INFO - DataCatalog: Getting merit_hydro RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/merit_hydro/{variable}.tif
-2023-07-25 13:35:15,742 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
-2023-07-25 13:35:15,758 - build - river - DEBUG - Set river mask (min uparea: 30 km2) and prepare flow dirs.
-2023-07-25 13:35:15,912 - build - river - DEBUG - Derive river length.
-2023-07-25 13:35:22,850 - build - river - DEBUG - Derive river slope.
-2023-07-25 13:35:23,578 - build - river - DEBUG - Derive rivwth from hydrography dataset.
-2023-07-25 13:35:23,589 - build - data_catalog - INFO - DataCatalog: Getting roughness_river_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow/N_river_mapping.csv
-2023-07-25 13:35:23,590 - build - dataframe - INFO - DataFrame: Read csv data.
-2023-07-25 13:35:23,598 - build - landuse - INFO - Deriving N_River using average resampling (nodata=-999.0).
-2023-07-25 13:35:23,609 - build - data_catalog - INFO - DataCatalog: Getting rivers_lin2019_v1 GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/rivers_lin2019_v1.gpkg
-2023-07-25 13:35:23,610 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.778, 45.807, 12.745, 46.690].
-2023-07-25 13:35:23,879 - build - river - DEBUG - Derive ['rivwth', 'qbankfull'] from shapefile.
-2023-07-25 13:35:23,966 - build - river - DEBUG - Valid for 381/655 river cells (max dist: 392 m).
-2023-07-25 13:35:27,572 - build - wflow - DEBUG - Adding rivers vector to staticgeoms.
-2023-07-25 13:35:28,419 - build - model_api - INFO - setup_reservoirs.reservoirs_fn: hydro_reservoirs
-2023-07-25 13:35:28,419 - build - model_api - INFO - setup_reservoirs.timeseries_fn: gww
-2023-07-25 13:35:28,419 - build - model_api - INFO - setup_reservoirs.min_area: 1.0
-2023-07-25 13:35:28,419 - build - wflow - INFO - Preparing reservoir maps.
-2023-07-25 13:35:28,419 - build - data_catalog - INFO - DataCatalog: Getting hydro_reservoirs GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/hydro_reservoirs.gpkg
-2023-07-25 13:35:28,422 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
-2023-07-25 13:35:28,455 - build - geodataframe - DEBUG - GeoDataFrame: Convert units for 5 columns.
-2023-07-25 13:35:28,460 - build - wflow - WARNING - No reservoirs of sufficient size found within region! Skipping reservoir procedures!
-2023-07-25 13:35:28,460 - build - model_api - INFO - setup_lakes.lakes_fn: hydro_lakes
-2023-07-25 13:35:28,461 - build - model_api - INFO - setup_lakes.min_area: 1.0
-2023-07-25 13:35:28,461 - build - wflow - INFO - Preparing lake maps.
-2023-07-25 13:35:28,461 - build - data_catalog - INFO - DataCatalog: Getting hydro_lakes GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/hydro_lakes.gpkg
-2023-07-25 13:35:28,463 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
-2023-07-25 13:35:28,488 - build - geodataframe - DEBUG - GeoDataFrame: Convert units for 1 columns.
-2023-07-25 13:35:28,491 - build - wflow - INFO - 1 lake(s) of sufficient size found within region.
-2023-07-25 13:35:28,501 - build - waterbodies - DEBUG - Setting lake outlet map based maximum upstream area.
-2023-07-25 13:35:28,515 - build - wflow - INFO - No rating curve data provided. Using default storage/outflow function parameters.
-2023-07-25 13:35:28,581 - build - model_api - INFO - setup_riverbedsed.bedsed_mapping_fn: None
-2023-07-25 13:35:28,581 - build - wflow_sediment - INFO - Preparing riverbedsed parameter maps.
-2023-07-25 13:35:28,581 - build - data_catalog - INFO - DataCatalog: Getting riverbedsed_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow_sediment/riverbedsed_mapping.csv
-2023-07-25 13:35:28,582 - build - dataframe - INFO - DataFrame: Read csv data.
-2023-07-25 13:35:28,589 - build - landuse - INFO - Deriving D50_River using average resampling (nodata=-999.0).
-2023-07-25 13:35:28,600 - build - landuse - INFO - Deriving ClayF_River using average resampling (nodata=-999.0).
-2023-07-25 13:35:28,610 - build - landuse - INFO - Deriving SiltF_River using average resampling (nodata=-999.0).
-2023-07-25 13:35:28,620 - build - landuse - INFO - Deriving SandF_River using average resampling (nodata=-999.0).
-2023-07-25 13:35:28,630 - build - landuse - INFO - Deriving GravelF_River using average resampling (nodata=-999.0).
-2023-07-25 13:35:28,646 - build - model_api - INFO - setup_lulcmaps.lulc_fn: globcover
-2023-07-25 13:35:28,646 - build - model_api - INFO - setup_lulcmaps.lulc_mapping_fn: None
-2023-07-25 13:35:28,646 - build - model_api - INFO - setup_lulcmaps.lulc_vars: ['landuse', 'Cov_River', 'Kext', 'N', 'PathFrac', 'Sl', 'Swood', 'USLE_C', 'WaterFrac']
-2023-07-25 13:35:28,646 - build - wflow - INFO - Preparing LULC parameter maps.
-2023-07-25 13:35:28,646 - build - data_catalog - INFO - DataCatalog: Getting globcover RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/globcover.tif
-2023-07-25 13:35:28,665 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
-2023-07-25 13:35:28,666 - build - data_catalog - INFO - DataCatalog: Getting globcover_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/lulc/globcover_mapping.csv
-2023-07-25 13:35:28,667 - build - dataframe - INFO - DataFrame: Read csv data.
-2023-07-25 13:35:28,675 - build - landuse - INFO - Deriving landuse using nearest resampling (nodata=230).
-2023-07-25 13:35:28,739 - build - landuse - INFO - Deriving Cov_River using average resampling (nodata=-999.0).
-2023-07-25 13:35:28,793 - build - landuse - INFO - Deriving Kext using average resampling (nodata=-999.0).
-2023-07-25 13:35:28,848 - build - landuse - INFO - Deriving N using average resampling (nodata=-999.0).
-2023-07-25 13:35:28,904 - build - landuse - INFO - Deriving PathFrac using average resampling (nodata=-999.0).
-2023-07-25 13:35:28,960 - build - landuse - INFO - Deriving Sl using average resampling (nodata=-999.0).
-2023-07-25 13:35:29,017 - build - landuse - INFO - Deriving Swood using average resampling (nodata=-999.0).
-2023-07-25 13:35:29,074 - build - landuse - INFO - Deriving USLE_C using average resampling (nodata=-999.0).
-2023-07-25 13:35:29,132 - build - landuse - INFO - Deriving WaterFrac using average resampling (nodata=-999.0).
-2023-07-25 13:35:29,199 - build - model_api - INFO - setup_laimaps.lai_fn: modis_lai
-2023-07-25 13:35:29,199 - build - wflow - INFO - Preparing LAI maps.
-2023-07-25 13:35:29,200 - build - data_catalog - INFO - DataCatalog: Getting modis_lai RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/modis_lai.nc
-2023-07-25 13:35:29,282 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
-2023-07-25 13:35:29,284 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 1 variables.
-2023-07-25 13:35:29,291 - build - landuse - INFO - Deriving LAI using average resampling (nodata=nan).
-2023-07-25 13:35:29,357 - build - model_api - INFO - setup_canopymaps.canopy_fn: simard
-2023-07-25 13:35:29,357 - build - wflow_sediment - INFO - Preparing canopy height map.
-2023-07-25 13:35:29,357 - build - data_catalog - INFO - DataCatalog: Getting simard RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/simard.tif
-2023-07-25 13:35:29,375 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
-2023-07-25 13:35:29,426 - build - model_api - INFO - setup_soilmaps.soil_fn: soilgrids
-2023-07-25 13:35:29,426 - build - model_api - INFO - setup_soilmaps.usleK_method: renard
-2023-07-25 13:35:29,426 - build - wflow_sediment - INFO - Preparing soil parameter maps.
-2023-07-25 13:35:29,427 - build - data_catalog - INFO - DataCatalog: Getting soilgrids RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/soilgrids/{variable}.tif
-2023-07-25 13:35:30,268 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
-2023-07-25 13:35:30,281 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 21 variables.
-2023-07-25 13:35:30,815 - build - soilgrids - INFO - Interpolate NAN values for PercentClay
-2023-07-25 13:35:30,847 - build - soilgrids - INFO - Interpolate NAN values for PercentSilt
-2023-07-25 13:35:30,871 - build - soilgrids - INFO - Interpolate NAN values for PercentOC
-2023-07-25 13:35:30,903 - build - soilgrids - INFO - Interpolate NAN values for ErosK
-2023-07-25 13:35:30,931 - build - soilgrids - INFO - Interpolate NAN values for USLE_K
-2023-07-25 13:35:30,942 - build - model_api - INFO - setup_outlets.river_only: True
-2023-07-25 13:35:30,942 - build - model_api - INFO - setup_outlets.toml_output: csv
-2023-07-25 13:35:30,942 - build - model_api - INFO - setup_outlets.gauge_toml_header: ['TSS']
-2023-07-25 13:35:30,942 - build - model_api - INFO - setup_outlets.gauge_toml_param: ['lateral.river.SSconc']
-2023-07-25 13:35:30,942 - build - wflow - INFO - Gauges locations set based on river outlets.
-2023-07-25 13:35:30,949 - build - wflow - INFO - Gauges map based on catchment river outlets added.
-2023-07-25 13:35:30,949 - build - wflow - INFO - Adding ['lateral.river.SSconc'] to csv section of toml.
-2023-07-25 13:35:30,949 - build - model_api - INFO - setup_gauges.gauges_fn: grdc
-2023-07-25 13:35:30,949 - build - model_api - INFO - setup_gauges.source_gdf: None
-2023-07-25 13:35:30,949 - build - model_api - INFO - setup_gauges.snap_to_river: True
-2023-07-25 13:35:30,949 - build - model_api - INFO - setup_gauges.mask: None
-2023-07-25 13:35:30,949 - build - model_api - INFO - setup_gauges.derive_subcatch: False
-2023-07-25 13:35:30,949 - build - model_api - INFO - setup_gauges.basename: None
-2023-07-25 13:35:30,949 - build - model_api - INFO - setup_gauges.toml_output: csv
-2023-07-25 13:35:30,949 - build - model_api - INFO - setup_gauges.gauge_toml_header: ['Q', 'TSS']
-2023-07-25 13:35:30,949 - build - model_api - INFO - setup_gauges.gauge_toml_param: ['lateral.river.q_riv', 'lateral.river.SSconc']
-2023-07-25 13:35:30,949 - build - data_catalog - INFO - DataCatalog: Getting grdc GeoDataFrame csv data from /home/runner/.hydromt_data/artifact_data/v0.0.8/grdc.csv
-2023-07-25 13:35:30,952 - build - geodataframe - INFO - GeoDataFrame: Read csv data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
-2023-07-25 13:35:30,967 - build - wflow - INFO - 3 grdc gauge locations found within domain
-2023-07-25 13:35:31,435 - build - wflow - INFO - Adding ['lateral.river.q_riv', 'lateral.river.SSconc'] to csv section of toml.
-2023-07-25 13:35:31,435 - build - model_api - INFO - setup_constant_pars.dtype: float32
-2023-07-25 13:35:31,435 - build - model_api - INFO - setup_constant_pars.nodata: -999
-2023-07-25 13:35:31,435 - build - model_api - INFO - setup_constant_pars.c_Bagnold: 1.75e-05
-2023-07-25 13:35:31,435 - build - model_api - INFO - setup_constant_pars.eros_expo: 1.5
-2023-07-25 13:35:31,435 - build - model_api - INFO - setup_constant_pars.eros_ov: 0.9
-2023-07-25 13:35:31,435 - build - model_api - INFO - setup_constant_pars.eros_spl_EUROSEM: 2.0
-2023-07-25 13:35:31,435 - build - model_api - INFO - setup_constant_pars.exp_Bagnold: 1.4
-2023-07-25 13:35:31,435 - build - model_api - INFO - setup_constant_pars.ResTrapEff: 1.0
-2023-07-25 13:35:31,449 - build - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_sediment
-2023-07-25 13:35:31,462 - build - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_sediment/wflow_sediment.toml
-2023-07-25 13:35:31,537 - build - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_sediment/staticmaps.nc
-2023-07-25 13:35:31,816 - build - wflow - INFO - Writing model staticgeom to file.
+2023-07-27 08:05:20,111 - build - log - DEBUG - Writing log messages to new file /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_sediment/hydromt.log.
+2023-07-27 08:05:20,111 - build - log - INFO - HydroMT version: 0.8.1.dev0
+2023-07-27 08:05:20,111 - build - main - INFO - Building instance of wflow_sediment model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_sediment.
+2023-07-27 08:05:20,111 - build - main - INFO - User settings:
+2023-07-27 08:05:20,178 - build - data_catalog - INFO - Reading data catalog artifact_data v0.0.8 from archive
+2023-07-27 08:05:20,178 - build - data_catalog - INFO - Parsing data catalog from /home/runner/.hydromt_data/artifact_data/v0.0.8/data_catalog.yml
+2023-07-27 08:05:20,254 - build - model_api - INFO - Initializing wflow_sediment model from hydromt_wflow (v0.2.2.dev0).
+2023-07-27 08:05:20,254 - build - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
+2023-07-27 08:05:20,267 - build - model_api - DEBUG - Setting model config options.
+2023-07-27 08:05:20,269 - build - model_api - DEBUG - Default config read from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow_sediment/wflow_sediment.toml
+2023-07-27 08:05:20,269 - build - model_api - INFO - setup_basemaps.region: {'subbasin': [12.2051, 45.8331], 'strord': 4, 'bounds': [11.7, 45.35, 12.95, 46.7]}
+2023-07-27 08:05:20,269 - build - model_api - INFO - setup_basemaps.res: 0.00833
+2023-07-27 08:05:20,269 - build - model_api - INFO - setup_basemaps.hydrography_fn: merit_hydro
+2023-07-27 08:05:20,269 - build - model_api - INFO - setup_basemaps.basin_index_fn: merit_hydro_index
+2023-07-27 08:05:20,270 - build - model_api - INFO - setup_basemaps.upscale_method: ihu
+2023-07-27 08:05:20,270 - build - wflow - INFO - Preparing base hydrography basemaps.
+2023-07-27 08:05:20,270 - build - data_catalog - INFO - DataCatalog: Getting merit_hydro RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/merit_hydro/{variable}.tif
+2023-07-27 08:05:20,412 - build - basin_mask - DEBUG - Parsed region (kind=subbasin): {'strord': 4, 'bounds': [11.7, 45.35, 12.95, 46.7], 'xy': [12.2051, 45.8331]}
+2023-07-27 08:05:24,547 - build - basin_mask - INFO - subbasin bbox: [11.7750, 45.8042, 12.7450, 46.6900]
+2023-07-27 08:05:24,649 - build - wflow - DEBUG - Adding basins vector to staticgeoms.
+2023-07-27 08:05:24,649 - build - basemaps - DEBUG - Mask in dataset assumed to represent subbasins.
+2023-07-27 08:05:24,650 - build - basemaps - DEBUG - (Sub)basin at original resolution has 664756 cells.
+2023-07-27 08:05:24,742 - build - basemaps - DEBUG - Burn subbasin outlet in upstream area data.
+2023-07-27 08:05:24,787 - build - basemaps - INFO - Upscale flow direction data: 10x, ihu method.
+2023-07-27 08:05:41,811 - build - basemaps - DEBUG - Derive stream order.
+2023-07-27 08:05:42,289 - build - basemaps - DEBUG - Map shape: (106, 116); active cells: 6637.
+2023-07-27 08:05:42,290 - build - basemaps - DEBUG - Outlet coordinates (1/1): (12.20750,45.83583).
+2023-07-27 08:05:42,393 - build - wflow - DEBUG - Adding region vector to staticgeoms.
+2023-07-27 08:05:42,398 - build - model_api - INFO - setup_rivers.args: ()
+2023-07-27 08:05:42,398 - build - model_api - INFO - setup_rivers.hydrography_fn: merit_hydro
+2023-07-27 08:05:42,398 - build - model_api - INFO - setup_rivers.river_geom_fn: rivers_lin2019_v1
+2023-07-27 08:05:42,398 - build - model_api - INFO - setup_rivers.river_upa: 30
+2023-07-27 08:05:42,398 - build - model_api - INFO - setup_rivers.rivdph_method: powlaw
+2023-07-27 08:05:42,398 - build - model_api - INFO - setup_rivers.min_rivdph: 1
+2023-07-27 08:05:42,399 - build - model_api - INFO - setup_rivers.min_rivwth: 30
+2023-07-27 08:05:42,399 - build - model_api - INFO - setup_rivers.slope_len: 2000
+2023-07-27 08:05:42,399 - build - model_api - INFO - setup_rivers.smooth_len: 5000
+2023-07-27 08:05:42,399 - build - wflow - INFO - Preparing river maps.
+2023-07-27 08:05:42,399 - build - data_catalog - INFO - DataCatalog: Getting merit_hydro RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/merit_hydro/{variable}.tif
+2023-07-27 08:05:42,530 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
+2023-07-27 08:05:42,547 - build - river - DEBUG - Set river mask (min uparea: 30 km2) and prepare flow dirs.
+2023-07-27 08:05:42,702 - build - river - DEBUG - Derive river length.
+2023-07-27 08:05:49,155 - build - river - DEBUG - Derive river slope.
+2023-07-27 08:05:49,863 - build - river - DEBUG - Derive rivwth from hydrography dataset.
+2023-07-27 08:05:49,883 - build - data_catalog - INFO - DataCatalog: Getting roughness_river_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow/N_river_mapping.csv
+2023-07-27 08:05:49,883 - build - dataframe - INFO - DataFrame: Read csv data.
+2023-07-27 08:05:49,891 - build - landuse - INFO - Deriving N_River using average resampling (nodata=-999.0).
+2023-07-27 08:05:49,903 - build - data_catalog - INFO - DataCatalog: Getting rivers_lin2019_v1 GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/rivers_lin2019_v1.gpkg
+2023-07-27 08:05:49,904 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.778, 45.807, 12.745, 46.690].
+2023-07-27 08:05:50,166 - build - river - DEBUG - Derive ['rivwth', 'qbankfull'] from shapefile.
+2023-07-27 08:05:50,253 - build - river - DEBUG - Valid for 381/655 river cells (max dist: 392 m).
+2023-07-27 08:05:53,776 - build - wflow - DEBUG - Adding rivers vector to staticgeoms.
+2023-07-27 08:05:54,839 - build - model_api - INFO - setup_reservoirs.reservoirs_fn: hydro_reservoirs
+2023-07-27 08:05:54,839 - build - model_api - INFO - setup_reservoirs.timeseries_fn: gww
+2023-07-27 08:05:54,839 - build - model_api - INFO - setup_reservoirs.min_area: 1.0
+2023-07-27 08:05:54,839 - build - wflow - INFO - Preparing reservoir maps.
+2023-07-27 08:05:54,839 - build - data_catalog - INFO - DataCatalog: Getting hydro_reservoirs GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/hydro_reservoirs.gpkg
+2023-07-27 08:05:54,842 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
+2023-07-27 08:05:54,877 - build - geodataframe - DEBUG - GeoDataFrame: Convert units for 5 columns.
+2023-07-27 08:05:54,882 - build - wflow - WARNING - No reservoirs of sufficient size found within region! Skipping reservoir procedures!
+2023-07-27 08:05:54,883 - build - model_api - INFO - setup_lakes.lakes_fn: hydro_lakes
+2023-07-27 08:05:54,883 - build - model_api - INFO - setup_lakes.min_area: 1.0
+2023-07-27 08:05:54,883 - build - wflow - INFO - Preparing lake maps.
+2023-07-27 08:05:54,883 - build - data_catalog - INFO - DataCatalog: Getting hydro_lakes GeoDataFrame vector data from /home/runner/.hydromt_data/artifact_data/v0.0.8/hydro_lakes.gpkg
+2023-07-27 08:05:54,885 - build - geodataframe - INFO - GeoDataFrame: Read vector data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
+2023-07-27 08:05:54,910 - build - geodataframe - DEBUG - GeoDataFrame: Convert units for 1 columns.
+2023-07-27 08:05:54,913 - build - wflow - INFO - 1 lake(s) of sufficient size found within region.
+2023-07-27 08:05:54,923 - build - waterbodies - DEBUG - Setting lake outlet map based maximum upstream area.
+2023-07-27 08:05:54,937 - build - wflow - INFO - No rating curve data provided. Using default storage/outflow function parameters.
+2023-07-27 08:05:55,001 - build - model_api - INFO - setup_riverbedsed.bedsed_mapping_fn: None
+2023-07-27 08:05:55,001 - build - wflow_sediment - INFO - Preparing riverbedsed parameter maps.
+2023-07-27 08:05:55,001 - build - data_catalog - INFO - DataCatalog: Getting riverbedsed_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow_sediment/riverbedsed_mapping.csv
+2023-07-27 08:05:55,002 - build - dataframe - INFO - DataFrame: Read csv data.
+2023-07-27 08:05:55,009 - build - landuse - INFO - Deriving D50_River using average resampling (nodata=-999.0).
+2023-07-27 08:05:55,019 - build - landuse - INFO - Deriving ClayF_River using average resampling (nodata=-999.0).
+2023-07-27 08:05:55,029 - build - landuse - INFO - Deriving SiltF_River using average resampling (nodata=-999.0).
+2023-07-27 08:05:55,040 - build - landuse - INFO - Deriving SandF_River using average resampling (nodata=-999.0).
+2023-07-27 08:05:55,050 - build - landuse - INFO - Deriving GravelF_River using average resampling (nodata=-999.0).
+2023-07-27 08:05:55,065 - build - model_api - INFO - setup_lulcmaps.lulc_fn: globcover
+2023-07-27 08:05:55,065 - build - model_api - INFO - setup_lulcmaps.lulc_mapping_fn: None
+2023-07-27 08:05:55,065 - build - model_api - INFO - setup_lulcmaps.lulc_vars: ['landuse', 'Cov_River', 'Kext', 'N', 'PathFrac', 'Sl', 'Swood', 'USLE_C', 'WaterFrac']
+2023-07-27 08:05:55,065 - build - wflow - INFO - Preparing LULC parameter maps.
+2023-07-27 08:05:55,066 - build - data_catalog - INFO - DataCatalog: Getting globcover RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/globcover.tif
+2023-07-27 08:05:55,084 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
+2023-07-27 08:05:55,086 - build - data_catalog - INFO - DataCatalog: Getting globcover_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/lulc/globcover_mapping.csv
+2023-07-27 08:05:55,086 - build - dataframe - INFO - DataFrame: Read csv data.
+2023-07-27 08:05:55,096 - build - landuse - INFO - Deriving landuse using nearest resampling (nodata=230).
+2023-07-27 08:05:55,161 - build - landuse - INFO - Deriving Cov_River using average resampling (nodata=-999.0).
+2023-07-27 08:05:55,216 - build - landuse - INFO - Deriving Kext using average resampling (nodata=-999.0).
+2023-07-27 08:05:55,272 - build - landuse - INFO - Deriving N using average resampling (nodata=-999.0).
+2023-07-27 08:05:55,327 - build - landuse - INFO - Deriving PathFrac using average resampling (nodata=-999.0).
+2023-07-27 08:05:55,382 - build - landuse - INFO - Deriving Sl using average resampling (nodata=-999.0).
+2023-07-27 08:05:55,436 - build - landuse - INFO - Deriving Swood using average resampling (nodata=-999.0).
+2023-07-27 08:05:55,490 - build - landuse - INFO - Deriving USLE_C using average resampling (nodata=-999.0).
+2023-07-27 08:05:55,545 - build - landuse - INFO - Deriving WaterFrac using average resampling (nodata=-999.0).
+2023-07-27 08:05:55,608 - build - model_api - INFO - setup_laimaps.lai_fn: modis_lai
+2023-07-27 08:05:55,609 - build - wflow - INFO - Preparing LAI maps.
+2023-07-27 08:05:55,609 - build - data_catalog - INFO - DataCatalog: Getting modis_lai RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/modis_lai.nc
+2023-07-27 08:05:55,690 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
+2023-07-27 08:05:55,692 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 1 variables.
+2023-07-27 08:05:55,699 - build - landuse - INFO - Deriving LAI using average resampling (nodata=nan).
+2023-07-27 08:05:55,766 - build - model_api - INFO - setup_canopymaps.canopy_fn: simard
+2023-07-27 08:05:55,766 - build - wflow_sediment - INFO - Preparing canopy height map.
+2023-07-27 08:05:55,767 - build - data_catalog - INFO - DataCatalog: Getting simard RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/simard.tif
+2023-07-27 08:05:55,784 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
+2023-07-27 08:05:55,834 - build - model_api - INFO - setup_soilmaps.soil_fn: soilgrids
+2023-07-27 08:05:55,834 - build - model_api - INFO - setup_soilmaps.usleK_method: renard
+2023-07-27 08:05:55,835 - build - wflow_sediment - INFO - Preparing soil parameter maps.
+2023-07-27 08:05:55,835 - build - data_catalog - INFO - DataCatalog: Getting soilgrids RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/soilgrids/{variable}.tif
+2023-07-27 08:05:56,412 - build - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.778, 45.807, 12.745, 46.690] (epsg:4326))
+2023-07-27 08:05:56,424 - build - rasterdataset - DEBUG - RasterDataset: Convert units for 21 variables.
+2023-07-27 08:05:56,941 - build - soilgrids - INFO - Interpolate NAN values for PercentClay
+2023-07-27 08:05:56,963 - build - soilgrids - INFO - Interpolate NAN values for PercentSilt
+2023-07-27 08:05:56,998 - build - soilgrids - INFO - Interpolate NAN values for PercentOC
+2023-07-27 08:05:57,031 - build - soilgrids - INFO - Interpolate NAN values for ErosK
+2023-07-27 08:05:57,059 - build - soilgrids - INFO - Interpolate NAN values for USLE_K
+2023-07-27 08:05:57,069 - build - model_api - INFO - setup_outlets.river_only: True
+2023-07-27 08:05:57,069 - build - model_api - INFO - setup_outlets.toml_output: csv
+2023-07-27 08:05:57,069 - build - model_api - INFO - setup_outlets.gauge_toml_header: ['TSS']
+2023-07-27 08:05:57,069 - build - model_api - INFO - setup_outlets.gauge_toml_param: ['lateral.river.SSconc']
+2023-07-27 08:05:57,069 - build - wflow - INFO - Gauges locations set based on river outlets.
+2023-07-27 08:05:57,076 - build - wflow - INFO - Gauges map based on catchment river outlets added.
+2023-07-27 08:05:57,076 - build - wflow - INFO - Adding ['lateral.river.SSconc'] to csv section of toml.
+2023-07-27 08:05:57,076 - build - model_api - INFO - setup_gauges.gauges_fn: grdc
+2023-07-27 08:05:57,076 - build - model_api - INFO - setup_gauges.source_gdf: None
+2023-07-27 08:05:57,076 - build - model_api - INFO - setup_gauges.snap_to_river: True
+2023-07-27 08:05:57,076 - build - model_api - INFO - setup_gauges.mask: None
+2023-07-27 08:05:57,076 - build - model_api - INFO - setup_gauges.derive_subcatch: False
+2023-07-27 08:05:57,076 - build - model_api - INFO - setup_gauges.basename: None
+2023-07-27 08:05:57,076 - build - model_api - INFO - setup_gauges.toml_output: csv
+2023-07-27 08:05:57,076 - build - model_api - INFO - setup_gauges.gauge_toml_header: ['Q', 'TSS']
+2023-07-27 08:05:57,076 - build - model_api - INFO - setup_gauges.gauge_toml_param: ['lateral.river.q_riv', 'lateral.river.SSconc']
+2023-07-27 08:05:57,076 - build - data_catalog - INFO - DataCatalog: Getting grdc GeoDataFrame csv data from /home/runner/.hydromt_data/artifact_data/v0.0.8/grdc.csv
+2023-07-27 08:05:57,080 - build - geodataframe - INFO - GeoDataFrame: Read csv data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
+2023-07-27 08:05:57,094 - build - wflow - INFO - 3 grdc gauge locations found within domain
+2023-07-27 08:05:57,553 - build - wflow - INFO - Adding ['lateral.river.q_riv', 'lateral.river.SSconc'] to csv section of toml.
+2023-07-27 08:05:57,553 - build - model_api - INFO - setup_constant_pars.dtype: float32
+2023-07-27 08:05:57,553 - build - model_api - INFO - setup_constant_pars.nodata: -999
+2023-07-27 08:05:57,553 - build - model_api - INFO - setup_constant_pars.c_Bagnold: 1.75e-05
+2023-07-27 08:05:57,553 - build - model_api - INFO - setup_constant_pars.eros_expo: 1.5
+2023-07-27 08:05:57,553 - build - model_api - INFO - setup_constant_pars.eros_ov: 0.9
+2023-07-27 08:05:57,553 - build - model_api - INFO - setup_constant_pars.eros_spl_EUROSEM: 2.0
+2023-07-27 08:05:57,553 - build - model_api - INFO - setup_constant_pars.exp_Bagnold: 1.4
+2023-07-27 08:05:57,553 - build - model_api - INFO - setup_constant_pars.ResTrapEff: 1.0
+2023-07-27 08:05:57,567 - build - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_sediment
+2023-07-27 08:05:57,580 - build - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_sediment/wflow_sediment.toml
+2023-07-27 08:05:57,654 - build - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_sediment/staticmaps.nc
+2023-07-27 08:05:57,926 - build - wflow - INFO - Writing model staticgeom to file.
malloc(): unsorted double linked list corrupted
Aborted (core dumped)
-2023-07-25 13:35:35,570 - update - log - DEBUG - Writing log messages to new file /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment/hydromt.log.
-2023-07-25 13:35:35,570 - update - log - INFO - HydroMT version: 0.8.1.dev0
-2023-07-25 13:35:35,571 - update - main - INFO - Updating wflow_sediment model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin (r).
-2023-07-25 13:35:35,571 - update - main - INFO - Output dir: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment
-2023-07-25 13:35:35,571 - update - main - INFO - User settings:
-2023-07-25 13:35:35,645 - update - data_catalog - INFO - Reading data catalog artifact_data v0.0.8 from archive
-2023-07-25 13:35:35,645 - update - data_catalog - INFO - Parsing data catalog from /home/runner/.hydromt_data/artifact_data/v0.0.8/data_catalog.yml
-2023-07-25 13:35:35,722 - update - log - DEBUG - Writing log messages to new file /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/hydromt.log.
-2023-07-25 13:35:35,722 - update - model_api - INFO - Initializing wflow_sediment model from hydromt_wflow (v0.2.2.dev0).
-2023-07-25 13:35:35,722 - update - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
-2023-07-25 13:35:35,735 - update - model_api - ERROR - Model config file not found at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/wflow_sediment.toml
-2023-07-25 13:35:35,735 - update - model_api - ERROR - Model config file not found at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/wflow_sediment.toml
-2023-07-25 13:35:35,735 - update - model_api - ERROR - Model config file not found at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/wflow_sediment.toml
-2023-07-25 13:35:35,735 - update - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
-2023-07-25 13:35:35,859 - update - wflow - INFO - Reading model intbl files.
-2023-07-25 13:35:35,859 - update - wflow - INFO - Reading model table files.
-2023-07-25 13:35:35,859 - update - model_api - ERROR - Model config file not found at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/wflow_sediment.toml
-2023-07-25 13:35:35,860 - update - wflow - INFO - Reading model staticgeom files.
-2023-07-25 13:35:36,003 - update - model_api - ERROR - Model config file not found at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/wflow_sediment.toml
-2023-07-25 13:35:36,003 - update - model_api - ERROR - Model config file not found at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/wflow_sediment.toml
-2023-07-25 13:35:36,003 - update - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
-2023-07-25 13:35:36,020 - update - wflow - INFO - Model read
-2023-07-25 13:35:36,020 - update - log - DEBUG - Appending log messages to file /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment/hydromt.log.
-2023-07-25 13:35:36,025 - update - model_api - INFO - setup_riverbedsed.bedsed_mapping_fn: None
-2023-07-25 13:35:36,026 - update - wflow_sediment - INFO - Preparing riverbedsed parameter maps.
-2023-07-25 13:35:36,026 - update - data_catalog - INFO - DataCatalog: Getting riverbedsed_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow_sediment/riverbedsed_mapping.csv
-2023-07-25 13:35:36,026 - update - dataframe - INFO - DataFrame: Read csv data.
-2023-07-25 13:35:36,035 - update - landuse - INFO - Deriving D50_River using average resampling (nodata=-999.0).
-2023-07-25 13:35:36,044 - update - landuse - INFO - Deriving ClayF_River using average resampling (nodata=-999.0).
-2023-07-25 13:35:36,054 - update - landuse - INFO - Deriving SiltF_River using average resampling (nodata=-999.0).
-2023-07-25 13:35:36,064 - update - landuse - INFO - Deriving SandF_River using average resampling (nodata=-999.0).
-2023-07-25 13:35:36,074 - update - landuse - INFO - Deriving GravelF_River using average resampling (nodata=-999.0).
-2023-07-25 13:35:36,093 - update - model_api - INFO - setup_lulcmaps.lulc_fn: globcover
-2023-07-25 13:35:36,093 - update - model_api - INFO - setup_lulcmaps.lulc_mapping_fn: None
-2023-07-25 13:35:36,093 - update - model_api - INFO - setup_lulcmaps.lulc_vars: ['landuse', 'Cov_River', 'Kext', 'N', 'PathFrac', 'Sl', 'Swood', 'USLE_C', 'WaterFrac']
-2023-07-25 13:35:36,093 - update - wflow - INFO - Preparing LULC parameter maps.
-2023-07-25 13:35:36,098 - update - data_catalog - INFO - DataCatalog: Getting globcover RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/globcover.tif
-2023-07-25 13:35:36,118 - update - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.775, 45.808, 12.742, 46.692] (epsg:4326))
-2023-07-25 13:35:36,120 - update - data_catalog - INFO - DataCatalog: Getting globcover_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/lulc/globcover_mapping.csv
-2023-07-25 13:35:36,120 - update - dataframe - INFO - DataFrame: Read csv data.
-2023-07-25 13:35:36,394 - update - landuse - INFO - Deriving landuse using nearest resampling (nodata=230).
-2023-07-25 13:35:36,459 - update - landuse - INFO - Deriving Cov_River using average resampling (nodata=-999.0).
-2023-07-25 13:35:36,515 - update - landuse - INFO - Deriving Kext using average resampling (nodata=-999.0).
-2023-07-25 13:35:36,570 - update - landuse - INFO - Deriving N using average resampling (nodata=-999.0).
-2023-07-25 13:35:36,625 - update - landuse - INFO - Deriving PathFrac using average resampling (nodata=-999.0).
-2023-07-25 13:35:36,680 - update - landuse - INFO - Deriving Sl using average resampling (nodata=-999.0).
-2023-07-25 13:35:36,735 - update - landuse - INFO - Deriving Swood using average resampling (nodata=-999.0).
-2023-07-25 13:35:36,791 - update - landuse - INFO - Deriving USLE_C using average resampling (nodata=-999.0).
-2023-07-25 13:35:36,846 - update - landuse - INFO - Deriving WaterFrac using average resampling (nodata=-999.0).
-2023-07-25 13:35:36,901 - update - model_api - WARNING - Replacing staticmap: wflow_landuse
-2023-07-25 13:35:36,905 - update - model_api - WARNING - Replacing staticmap: Kext
-2023-07-25 13:35:36,907 - update - model_api - WARNING - Replacing staticmap: N
-2023-07-25 13:35:36,908 - update - model_api - WARNING - Replacing staticmap: PathFrac
-2023-07-25 13:35:36,910 - update - model_api - WARNING - Replacing staticmap: Sl
-2023-07-25 13:35:36,912 - update - model_api - WARNING - Replacing staticmap: Swood
-2023-07-25 13:35:36,916 - update - model_api - WARNING - Replacing staticmap: WaterFrac
-2023-07-25 13:35:36,918 - update - model_api - INFO - setup_canopymaps.canopy_fn: simard
-2023-07-25 13:35:36,918 - update - wflow_sediment - INFO - Preparing canopy height map.
-2023-07-25 13:35:36,922 - update - data_catalog - INFO - DataCatalog: Getting simard RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/simard.tif
-2023-07-25 13:35:36,940 - update - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.775, 45.808, 12.742, 46.692] (epsg:4326))
-2023-07-25 13:35:36,996 - update - model_api - INFO - setup_soilmaps.soil_fn: soilgrids
-2023-07-25 13:35:36,996 - update - model_api - INFO - setup_soilmaps.usleK_method: renard
-2023-07-25 13:35:36,996 - update - wflow_sediment - INFO - Preparing soil parameter maps.
-2023-07-25 13:35:37,001 - update - data_catalog - INFO - DataCatalog: Getting soilgrids RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/soilgrids/{variable}.tif
-2023-07-25 13:35:37,577 - update - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.775, 45.808, 12.742, 46.692] (epsg:4326))
-2023-07-25 13:35:37,589 - update - rasterdataset - DEBUG - RasterDataset: Convert units for 21 variables.
-2023-07-25 13:35:38,101 - update - soilgrids - INFO - Interpolate NAN values for PercentClay
-2023-07-25 13:35:38,121 - update - soilgrids - INFO - Interpolate NAN values for PercentSilt
-2023-07-25 13:35:38,141 - update - soilgrids - INFO - Interpolate NAN values for PercentOC
-2023-07-25 13:35:38,181 - update - soilgrids - INFO - Interpolate NAN values for ErosK
-2023-07-25 13:35:38,208 - update - soilgrids - INFO - Interpolate NAN values for USLE_K
-2023-07-25 13:35:38,220 - update - model_api - INFO - setup_gauges.gauges_fn: grdc
-2023-07-25 13:35:38,220 - update - model_api - INFO - setup_gauges.source_gdf: None
-2023-07-25 13:35:38,220 - update - model_api - INFO - setup_gauges.snap_to_river: True
-2023-07-25 13:35:38,220 - update - model_api - INFO - setup_gauges.mask: None
-2023-07-25 13:35:38,220 - update - model_api - INFO - setup_gauges.derive_subcatch: False
-2023-07-25 13:35:38,220 - update - model_api - INFO - setup_gauges.basename: None
-2023-07-25 13:35:38,220 - update - model_api - INFO - setup_gauges.toml_output: csv
-2023-07-25 13:35:38,220 - update - model_api - INFO - setup_gauges.gauge_toml_header: ['Q', 'TSS']
-2023-07-25 13:35:38,220 - update - model_api - INFO - setup_gauges.gauge_toml_param: ['lateral.river.q_riv', 'lateral.river.SSconc']
-2023-07-25 13:35:38,220 - update - data_catalog - INFO - DataCatalog: Getting grdc GeoDataFrame csv data from /home/runner/.hydromt_data/artifact_data/v0.0.8/grdc.csv
-2023-07-25 13:35:38,224 - update - geodataframe - INFO - GeoDataFrame: Read csv data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
-2023-07-25 13:35:38,239 - update - wflow - INFO - 3 grdc gauge locations found within domain
-2023-07-25 13:35:40,358 - update - model_api - WARNING - Replacing staticmap: wflow_gauges_grdc
-2023-07-25 13:35:40,372 - update - model_api - WARNING - Replacing geom: gauges_grdc
-2023-07-25 13:35:40,372 - update - wflow - INFO - Adding ['lateral.river.q_riv', 'lateral.river.SSconc'] to csv section of toml.
-2023-07-25 13:35:40,375 - update - model_api - DEBUG - Default config read from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow_sediment/wflow_sediment.toml
-2023-07-25 13:35:40,375 - update - model_api - INFO - setup_constant_pars.dtype: float32
-2023-07-25 13:35:40,375 - update - model_api - INFO - setup_constant_pars.nodata: -999
-2023-07-25 13:35:40,375 - update - model_api - INFO - setup_constant_pars.c_Bagnold: 1.75e-05
-2023-07-25 13:35:40,375 - update - model_api - INFO - setup_constant_pars.eros_expo: 1.5
-2023-07-25 13:35:40,375 - update - model_api - INFO - setup_constant_pars.eros_ov: 0.9
-2023-07-25 13:35:40,375 - update - model_api - INFO - setup_constant_pars.eros_spl_EUROSEM: 2.0
-2023-07-25 13:35:40,375 - update - model_api - INFO - setup_constant_pars.exp_Bagnold: 1.4
-2023-07-25 13:35:40,375 - update - model_api - INFO - setup_constant_pars.ResTrapEff: 1.0
-2023-07-25 13:35:40,392 - update - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment
-2023-07-25 13:35:40,400 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment/wflow_sediment.toml
-2023-07-25 13:35:40,537 - update - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment/staticmaps.nc
-2023-07-25 13:35:40,897 - update - wflow - INFO - Writing model staticgeom to file.
-2023-07-25 13:35:41,106 - update - wflow - INFO - Write forcing file
-2023-07-25 13:35:41,113 - update - wflow - WARNING - Not all dates found in precip_fn changing starttime to 2010-02-02 00:00:00 and endtime to 2010-02-10 00:00:00 in the toml.
-2023-07-25 13:35:41,113 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment/wflow_sediment.toml
-2023-07-25 13:35:41,127 - update - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment/inmaps.nc
-[########################################] | 100% Completed | 101.45 ms
-malloc(): mismatching next->prev_size (unsorted)
+2023-07-27 08:06:01,569 - update - log - DEBUG - Writing log messages to new file /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment/hydromt.log.
+2023-07-27 08:06:01,570 - update - log - INFO - HydroMT version: 0.8.1.dev0
+2023-07-27 08:06:01,570 - update - main - INFO - Updating wflow_sediment model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin (r).
+2023-07-27 08:06:01,570 - update - main - INFO - Output dir: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment
+2023-07-27 08:06:01,570 - update - main - INFO - User settings:
+2023-07-27 08:06:01,637 - update - data_catalog - INFO - Reading data catalog artifact_data v0.0.8 from archive
+2023-07-27 08:06:01,638 - update - data_catalog - INFO - Parsing data catalog from /home/runner/.hydromt_data/artifact_data/v0.0.8/data_catalog.yml
+2023-07-27 08:06:01,718 - update - log - DEBUG - Writing log messages to new file /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/hydromt.log.
+2023-07-27 08:06:01,719 - update - model_api - INFO - Initializing wflow_sediment model from hydromt_wflow (v0.2.2.dev0).
+2023-07-27 08:06:01,719 - update - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
+2023-07-27 08:06:01,734 - update - model_api - ERROR - Model config file not found at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/wflow_sediment.toml
+2023-07-27 08:06:01,735 - update - model_api - ERROR - Model config file not found at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/wflow_sediment.toml
+2023-07-27 08:06:01,735 - update - model_api - ERROR - Model config file not found at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/wflow_sediment.toml
+2023-07-27 08:06:01,735 - update - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
+2023-07-27 08:06:01,864 - update - wflow - INFO - Reading model intbl files.
+2023-07-27 08:06:01,864 - update - wflow - INFO - Reading model table files.
+2023-07-27 08:06:01,864 - update - model_api - ERROR - Model config file not found at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/wflow_sediment.toml
+2023-07-27 08:06:01,865 - update - wflow - INFO - Reading model staticgeom files.
+2023-07-27 08:06:02,016 - update - model_api - ERROR - Model config file not found at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/wflow_sediment.toml
+2023-07-27 08:06:02,016 - update - model_api - ERROR - Model config file not found at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/wflow_sediment.toml
+2023-07-27 08:06:02,016 - update - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
+2023-07-27 08:06:02,032 - update - wflow - INFO - Model read
+2023-07-27 08:06:02,033 - update - log - DEBUG - Appending log messages to file /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment/hydromt.log.
+2023-07-27 08:06:02,038 - update - model_api - INFO - setup_riverbedsed.bedsed_mapping_fn: None
+2023-07-27 08:06:02,038 - update - wflow_sediment - INFO - Preparing riverbedsed parameter maps.
+2023-07-27 08:06:02,038 - update - data_catalog - INFO - DataCatalog: Getting riverbedsed_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow_sediment/riverbedsed_mapping.csv
+2023-07-27 08:06:02,038 - update - dataframe - INFO - DataFrame: Read csv data.
+2023-07-27 08:06:02,047 - update - landuse - INFO - Deriving D50_River using average resampling (nodata=-999.0).
+2023-07-27 08:06:02,056 - update - landuse - INFO - Deriving ClayF_River using average resampling (nodata=-999.0).
+2023-07-27 08:06:02,066 - update - landuse - INFO - Deriving SiltF_River using average resampling (nodata=-999.0).
+2023-07-27 08:06:02,076 - update - landuse - INFO - Deriving SandF_River using average resampling (nodata=-999.0).
+2023-07-27 08:06:02,085 - update - landuse - INFO - Deriving GravelF_River using average resampling (nodata=-999.0).
+2023-07-27 08:06:02,104 - update - model_api - INFO - setup_lulcmaps.lulc_fn: globcover
+2023-07-27 08:06:02,104 - update - model_api - INFO - setup_lulcmaps.lulc_mapping_fn: None
+2023-07-27 08:06:02,104 - update - model_api - INFO - setup_lulcmaps.lulc_vars: ['landuse', 'Cov_River', 'Kext', 'N', 'PathFrac', 'Sl', 'Swood', 'USLE_C', 'WaterFrac']
+2023-07-27 08:06:02,104 - update - wflow - INFO - Preparing LULC parameter maps.
+2023-07-27 08:06:02,108 - update - data_catalog - INFO - DataCatalog: Getting globcover RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/globcover.tif
+2023-07-27 08:06:02,128 - update - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.775, 45.808, 12.742, 46.692] (epsg:4326))
+2023-07-27 08:06:02,130 - update - data_catalog - INFO - DataCatalog: Getting globcover_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/lulc/globcover_mapping.csv
+2023-07-27 08:06:02,130 - update - dataframe - INFO - DataFrame: Read csv data.
+2023-07-27 08:06:02,396 - update - landuse - INFO - Deriving landuse using nearest resampling (nodata=230).
+2023-07-27 08:06:02,461 - update - landuse - INFO - Deriving Cov_River using average resampling (nodata=-999.0).
+2023-07-27 08:06:02,515 - update - landuse - INFO - Deriving Kext using average resampling (nodata=-999.0).
+2023-07-27 08:06:02,569 - update - landuse - INFO - Deriving N using average resampling (nodata=-999.0).
+2023-07-27 08:06:02,623 - update - landuse - INFO - Deriving PathFrac using average resampling (nodata=-999.0).
+2023-07-27 08:06:02,677 - update - landuse - INFO - Deriving Sl using average resampling (nodata=-999.0).
+2023-07-27 08:06:02,730 - update - landuse - INFO - Deriving Swood using average resampling (nodata=-999.0).
+2023-07-27 08:06:02,783 - update - landuse - INFO - Deriving USLE_C using average resampling (nodata=-999.0).
+2023-07-27 08:06:02,837 - update - landuse - INFO - Deriving WaterFrac using average resampling (nodata=-999.0).
+2023-07-27 08:06:02,892 - update - model_api - WARNING - Replacing staticmap: wflow_landuse
+2023-07-27 08:06:02,895 - update - model_api - WARNING - Replacing staticmap: Kext
+2023-07-27 08:06:02,897 - update - model_api - WARNING - Replacing staticmap: N
+2023-07-27 08:06:02,899 - update - model_api - WARNING - Replacing staticmap: PathFrac
+2023-07-27 08:06:02,901 - update - model_api - WARNING - Replacing staticmap: Sl
+2023-07-27 08:06:02,903 - update - model_api - WARNING - Replacing staticmap: Swood
+2023-07-27 08:06:02,906 - update - model_api - WARNING - Replacing staticmap: WaterFrac
+2023-07-27 08:06:02,908 - update - model_api - INFO - setup_canopymaps.canopy_fn: simard
+2023-07-27 08:06:02,908 - update - wflow_sediment - INFO - Preparing canopy height map.
+2023-07-27 08:06:02,913 - update - data_catalog - INFO - DataCatalog: Getting simard RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/simard.tif
+2023-07-27 08:06:02,931 - update - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.775, 45.808, 12.742, 46.692] (epsg:4326))
+2023-07-27 08:06:02,986 - update - model_api - INFO - setup_soilmaps.soil_fn: soilgrids
+2023-07-27 08:06:02,986 - update - model_api - INFO - setup_soilmaps.usleK_method: renard
+2023-07-27 08:06:02,986 - update - wflow_sediment - INFO - Preparing soil parameter maps.
+2023-07-27 08:06:02,990 - update - data_catalog - INFO - DataCatalog: Getting soilgrids RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/soilgrids/{variable}.tif
+2023-07-27 08:06:03,559 - update - rasterdataset - DEBUG - RasterDataset: Clip with bbox - [11.775, 45.808, 12.742, 46.692] (epsg:4326))
+2023-07-27 08:06:03,571 - update - rasterdataset - DEBUG - RasterDataset: Convert units for 21 variables.
+2023-07-27 08:06:04,079 - update - soilgrids - INFO - Interpolate NAN values for PercentClay
+2023-07-27 08:06:04,099 - update - soilgrids - INFO - Interpolate NAN values for PercentSilt
+2023-07-27 08:06:04,131 - update - soilgrids - INFO - Interpolate NAN values for PercentOC
+2023-07-27 08:06:04,160 - update - soilgrids - INFO - Interpolate NAN values for ErosK
+2023-07-27 08:06:04,184 - update - soilgrids - INFO - Interpolate NAN values for USLE_K
+2023-07-27 08:06:04,197 - update - model_api - INFO - setup_gauges.gauges_fn: grdc
+2023-07-27 08:06:04,197 - update - model_api - INFO - setup_gauges.source_gdf: None
+2023-07-27 08:06:04,197 - update - model_api - INFO - setup_gauges.snap_to_river: True
+2023-07-27 08:06:04,197 - update - model_api - INFO - setup_gauges.mask: None
+2023-07-27 08:06:04,197 - update - model_api - INFO - setup_gauges.derive_subcatch: False
+2023-07-27 08:06:04,197 - update - model_api - INFO - setup_gauges.basename: None
+2023-07-27 08:06:04,197 - update - model_api - INFO - setup_gauges.toml_output: csv
+2023-07-27 08:06:04,197 - update - model_api - INFO - setup_gauges.gauge_toml_header: ['Q', 'TSS']
+2023-07-27 08:06:04,197 - update - model_api - INFO - setup_gauges.gauge_toml_param: ['lateral.river.q_riv', 'lateral.river.SSconc']
+2023-07-27 08:06:04,197 - update - data_catalog - INFO - DataCatalog: Getting grdc GeoDataFrame csv data from /home/runner/.hydromt_data/artifact_data/v0.0.8/grdc.csv
+2023-07-27 08:06:04,200 - update - geodataframe - INFO - GeoDataFrame: Read csv data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
+2023-07-27 08:06:04,215 - update - wflow - INFO - 3 grdc gauge locations found within domain
+2023-07-27 08:06:06,293 - update - model_api - WARNING - Replacing staticmap: wflow_gauges_grdc
+2023-07-27 08:06:06,307 - update - model_api - WARNING - Replacing geom: gauges_grdc
+2023-07-27 08:06:06,307 - update - wflow - INFO - Adding ['lateral.river.q_riv', 'lateral.river.SSconc'] to csv section of toml.
+2023-07-27 08:06:06,310 - update - model_api - DEBUG - Default config read from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/wflow_sediment/wflow_sediment.toml
+2023-07-27 08:06:06,310 - update - model_api - INFO - setup_constant_pars.dtype: float32
+2023-07-27 08:06:06,310 - update - model_api - INFO - setup_constant_pars.nodata: -999
+2023-07-27 08:06:06,310 - update - model_api - INFO - setup_constant_pars.c_Bagnold: 1.75e-05
+2023-07-27 08:06:06,310 - update - model_api - INFO - setup_constant_pars.eros_expo: 1.5
+2023-07-27 08:06:06,310 - update - model_api - INFO - setup_constant_pars.eros_ov: 0.9
+2023-07-27 08:06:06,310 - update - model_api - INFO - setup_constant_pars.eros_spl_EUROSEM: 2.0
+2023-07-27 08:06:06,310 - update - model_api - INFO - setup_constant_pars.exp_Bagnold: 1.4
+2023-07-27 08:06:06,311 - update - model_api - INFO - setup_constant_pars.ResTrapEff: 1.0
+2023-07-27 08:06:06,327 - update - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment
+2023-07-27 08:06:06,335 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment/wflow_sediment.toml
+2023-07-27 08:06:06,472 - update - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment/staticmaps.nc
+2023-07-27 08:06:06,831 - update - wflow - INFO - Writing model staticgeom to file.
+2023-07-27 08:06:07,035 - update - wflow - INFO - Write forcing file
+2023-07-27 08:06:07,042 - update - wflow - WARNING - Not all dates found in precip_fn changing starttime to 2010-02-02 00:00:00 and endtime to 2010-02-10 00:00:00 in the toml.
+2023-07-27 08:06:07,042 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment/wflow_sediment.toml
+2023-07-27 08:06:07,056 - update - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_extend_sediment/inmaps.nc
+[########################################] | 100% Completed | 101.93 ms
+corrupted size vs. prev_size
Aborted (core dumped)
-2023-07-25 13:35:50,282 - clip - log - INFO - HydroMT version: 0.8.1.dev0
-2023-07-25 13:35:50,282 - clip - main - INFO - Clipping instance of wflow model.
-2023-07-25 13:35:50,282 - clip - main - INFO - Region: {'subbasin': [12.3006, 46.4324], 'wflow_streamorder': 4}
-2023-07-25 13:35:50,304 - clip - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
-2023-07-25 13:35:50,304 - clip - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
-2023-07-25 13:35:50,318 - clip - main - INFO - Reading model to clip
-2023-07-25 13:35:50,320 - clip - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
-2023-07-25 13:35:50,443 - clip - wflow - INFO - Reading model intbl files.
-2023-07-25 13:35:50,444 - clip - wflow - INFO - Reading model table files.
-2023-07-25 13:35:50,444 - clip - wflow - INFO - Reading model staticgeom files.
-2023-07-25 13:35:50,589 - clip - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
-2023-07-25 13:35:50,605 - clip - wflow - INFO - Model read
-2023-07-25 13:35:50,606 - clip - main - INFO - Clipping staticmaps
-2023-07-25 13:35:54,128 - clip - basin_mask - INFO - subbasin bbox: [12.0083, 46.3417, 12.3250, 46.6750]
-2023-07-25 13:35:54,741 - clip - model_api - WARNING - Replacing geom: basins
-2023-07-25 13:35:55,845 - clip - model_api - WARNING - Replacing geom: rivers
-2023-07-25 13:35:55,846 - clip - wflow - INFO - Reading model table files.
-2023-07-25 13:35:55,847 - clip - main - INFO - Clipping forcing
-2023-07-25 13:35:55,847 - clip - wflow - INFO - Clipping NetCDF forcing..
-2023-07-25 13:35:55,852 - clip - model_api - WARNING - Replacing forcing: precip
-2023-07-25 13:35:55,853 - clip - model_api - WARNING - Replacing forcing: pet
-2023-07-25 13:35:55,853 - clip - model_api - WARNING - Replacing forcing: temp
-2023-07-25 13:35:55,853 - clip - main - INFO - Writting clipped model
-2023-07-25 13:35:55,853 - clip - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip
-2023-07-25 13:35:55,853 - clip - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip/wflow_sbm.toml
-2023-07-25 13:35:55,952 - clip - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip/staticmaps.nc
-2023-07-25 13:35:56,290 - clip - wflow - INFO - Write forcing file
-2023-07-25 13:35:56,311 - clip - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip/inmaps.nc
-[########################################] | 100% Completed | 101.48 ms
+2023-07-27 08:06:15,914 - clip - log - INFO - HydroMT version: 0.8.1.dev0
+2023-07-27 08:06:15,915 - clip - main - INFO - Clipping instance of wflow model.
+2023-07-27 08:06:15,915 - clip - main - INFO - Region: {'subbasin': [12.3006, 46.4324], 'wflow_streamorder': 4}
+2023-07-27 08:06:15,936 - clip - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
+2023-07-27 08:06:15,936 - clip - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
+2023-07-27 08:06:15,950 - clip - main - INFO - Reading model to clip
+2023-07-27 08:06:15,952 - clip - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
+2023-07-27 08:06:16,075 - clip - wflow - INFO - Reading model intbl files.
+2023-07-27 08:06:16,075 - clip - wflow - INFO - Reading model table files.
+2023-07-27 08:06:16,076 - clip - wflow - INFO - Reading model staticgeom files.
+2023-07-27 08:06:16,218 - clip - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
+2023-07-27 08:06:16,235 - clip - wflow - INFO - Model read
+2023-07-27 08:06:16,235 - clip - main - INFO - Clipping staticmaps
+2023-07-27 08:06:19,653 - clip - basin_mask - INFO - subbasin bbox: [12.0083, 46.3417, 12.3250, 46.6750]
+2023-07-27 08:06:20,256 - clip - model_api - WARNING - Replacing geom: basins
+2023-07-27 08:06:21,357 - clip - model_api - WARNING - Replacing geom: rivers
+2023-07-27 08:06:21,358 - clip - wflow - INFO - Reading model table files.
+2023-07-27 08:06:21,359 - clip - main - INFO - Clipping forcing
+2023-07-27 08:06:21,359 - clip - wflow - INFO - Clipping NetCDF forcing..
+2023-07-27 08:06:21,365 - clip - model_api - WARNING - Replacing forcing: precip
+2023-07-27 08:06:21,365 - clip - model_api - WARNING - Replacing forcing: pet
+2023-07-27 08:06:21,365 - clip - model_api - WARNING - Replacing forcing: temp
+2023-07-27 08:06:21,365 - clip - main - INFO - Writting clipped model
+2023-07-27 08:06:21,365 - clip - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip
+2023-07-27 08:06:21,365 - clip - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip/wflow_sbm.toml
+2023-07-27 08:06:21,464 - clip - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip/staticmaps.nc
+2023-07-27 08:06:21,801 - clip - wflow - INFO - Write forcing file
+2023-07-27 08:06:21,821 - clip - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip/inmaps.nc
+[########################################] | 100% Completed | 101.52 ms
malloc(): mismatching next->prev_size (unsorted)
Aborted (core dumped)
-2023-07-25 13:36:54,166 - update - log - INFO - HydroMT version: 0.8.1.dev0
-2023-07-25 13:36:54,166 - update - main - INFO - Updating wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin (r).
-2023-07-25 13:36:54,166 - update - main - INFO - Output dir: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing
-2023-07-25 13:36:54,166 - update - main - INFO - User settings:
-2023-07-25 13:36:54,244 - update - data_catalog - INFO - Reading data catalog artifact_data v0.0.8 from archive
-2023-07-25 13:36:54,245 - update - data_catalog - INFO - Parsing data catalog from /home/runner/.hydromt_data/artifact_data/v0.0.8/data_catalog.yml
-2023-07-25 13:36:54,321 - update - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
-2023-07-25 13:36:54,321 - update - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
-2023-07-25 13:36:54,337 - update - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
-2023-07-25 13:36:54,458 - update - wflow - INFO - Reading model intbl files.
-2023-07-25 13:36:54,459 - update - wflow - INFO - Reading model table files.
-2023-07-25 13:36:54,459 - update - wflow - INFO - Reading model staticgeom files.
-2023-07-25 13:36:54,601 - update - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
-2023-07-25 13:36:54,618 - update - wflow - INFO - Model read
-2023-07-25 13:36:54,623 - update - model_api - INFO - setup_precip_forcing.precip_fn: chirps_global
-2023-07-25 13:36:54,623 - update - model_api - INFO - setup_precip_forcing.precip_clim_fn: None
-2023-07-25 13:36:54,623 - update - model_api - INFO - setup_precip_forcing.chunksize: None
-2023-07-25 13:36:54,627 - update - data_catalog - INFO - DataCatalog: Getting chirps_global RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/chirps_global.nc
-2023-07-25 13:36:54,723 - update - model_api - WARNING - Replacing forcing: precip
-2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.temp_pet_fn: era5
-2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.pet_method: debruin
-2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.press_correction: True
-2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.temp_correction: True
-2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.wind_correction: True
-2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.wind_altitude: 10
-2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.reproj_method: nearest_index
-2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.dem_forcing_fn: era5_orography
-2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.skip_pet: False
-2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.chunksize: None
-2023-07-25 13:36:54,728 - update - data_catalog - INFO - DataCatalog: Getting era5 RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5.nc
-2023-07-25 13:36:54,784 - update - data_catalog - INFO - DataCatalog: Getting era5_orography RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5_orography.nc
-2023-07-25 13:36:55,042 - update - model_api - WARNING - Replacing forcing: pet
-2023-07-25 13:36:55,044 - update - model_api - WARNING - Replacing forcing: temp
-2023-07-25 13:36:55,044 - update - model_api - INFO - write_forcing.fn_out: None
-2023-07-25 13:36:55,044 - update - model_api - INFO - write_forcing.freq_out: M
-2023-07-25 13:36:55,044 - update - model_api - INFO - write_forcing.chunksize: 1
-2023-07-25 13:36:55,044 - update - model_api - INFO - write_forcing.decimals: 2
-2023-07-25 13:36:55,044 - update - model_api - INFO - write_forcing.time_units: days since 1900-01-01T00:00:00
-2023-07-25 13:36:55,044 - update - wflow - INFO - Write forcing file
-2023-07-25 13:36:55,052 - update - wflow - WARNING - Not all dates found in precip_fn changing starttime to 2010-02-02 00:00:00 and endtime to 2010-02-10 00:00:00 in the toml.
-2023-07-25 13:36:55,052 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/wflow_sbm.toml
-2023-07-25 13:36:55,075 - update - wflow - INFO - Writting several forcing with freq M
-2023-07-25 13:36:55,076 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/wflow_sbm.toml
-2023-07-25 13:36:55,086 - update - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/inmaps-chirps_20100202.nc
-[########################################] | 100% Completed | 102.27 ms
-2023-07-25 13:36:55,585 - update - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/staticmaps.nc
-2023-07-25 13:36:55,854 - update - wflow - INFO - Writing model staticgeom to file.
+2023-07-27 08:07:18,673 - update - log - INFO - HydroMT version: 0.8.1.dev0
+2023-07-27 08:07:18,674 - update - main - INFO - Updating wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin (r).
+2023-07-27 08:07:18,674 - update - main - INFO - Output dir: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing
+2023-07-27 08:07:18,674 - update - main - INFO - User settings:
+2023-07-27 08:07:18,739 - update - data_catalog - INFO - Reading data catalog artifact_data v0.0.8 from archive
+2023-07-27 08:07:18,740 - update - data_catalog - INFO - Parsing data catalog from /home/runner/.hydromt_data/artifact_data/v0.0.8/data_catalog.yml
+2023-07-27 08:07:18,815 - update - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
+2023-07-27 08:07:18,815 - update - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
+2023-07-27 08:07:18,831 - update - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
+2023-07-27 08:07:18,954 - update - wflow - INFO - Reading model intbl files.
+2023-07-27 08:07:18,955 - update - wflow - INFO - Reading model table files.
+2023-07-27 08:07:18,955 - update - wflow - INFO - Reading model staticgeom files.
+2023-07-27 08:07:19,097 - update - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
+2023-07-27 08:07:19,114 - update - wflow - INFO - Model read
+2023-07-27 08:07:19,119 - update - model_api - INFO - setup_precip_forcing.precip_fn: chirps_global
+2023-07-27 08:07:19,119 - update - model_api - INFO - setup_precip_forcing.precip_clim_fn: None
+2023-07-27 08:07:19,119 - update - model_api - INFO - setup_precip_forcing.chunksize: None
+2023-07-27 08:07:19,123 - update - data_catalog - INFO - DataCatalog: Getting chirps_global RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/chirps_global.nc
+2023-07-27 08:07:19,218 - update - model_api - WARNING - Replacing forcing: precip
+2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.temp_pet_fn: era5
+2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.pet_method: debruin
+2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.press_correction: True
+2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.temp_correction: True
+2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.wind_correction: True
+2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.wind_altitude: 10
+2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.reproj_method: nearest_index
+2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.dem_forcing_fn: era5_orography
+2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.skip_pet: False
+2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.chunksize: None
+2023-07-27 08:07:19,223 - update - data_catalog - INFO - DataCatalog: Getting era5 RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5.nc
+2023-07-27 08:07:19,280 - update - data_catalog - INFO - DataCatalog: Getting era5_orography RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5_orography.nc
+2023-07-27 08:07:19,536 - update - model_api - WARNING - Replacing forcing: pet
+2023-07-27 08:07:19,538 - update - model_api - WARNING - Replacing forcing: temp
+2023-07-27 08:07:19,539 - update - model_api - INFO - write_forcing.fn_out: None
+2023-07-27 08:07:19,539 - update - model_api - INFO - write_forcing.freq_out: M
+2023-07-27 08:07:19,539 - update - model_api - INFO - write_forcing.chunksize: 1
+2023-07-27 08:07:19,539 - update - model_api - INFO - write_forcing.decimals: 2
+2023-07-27 08:07:19,539 - update - model_api - INFO - write_forcing.time_units: days since 1900-01-01T00:00:00
+2023-07-27 08:07:19,539 - update - wflow - INFO - Write forcing file
+2023-07-27 08:07:19,546 - update - wflow - WARNING - Not all dates found in precip_fn changing starttime to 2010-02-02 00:00:00 and endtime to 2010-02-10 00:00:00 in the toml.
+2023-07-27 08:07:19,547 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/wflow_sbm.toml
+2023-07-27 08:07:19,569 - update - wflow - INFO - Writting several forcing with freq M
+2023-07-27 08:07:19,569 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/wflow_sbm.toml
+2023-07-27 08:07:19,577 - update - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/inmaps-chirps_20100202.nc
+[########################################] | 100% Completed | 102.92 ms
+2023-07-27 08:07:20,078 - update - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/staticmaps.nc
+2023-07-27 08:07:20,347 - update - wflow - INFO - Writing model staticgeom to file.
malloc(): unsorted double linked list corrupted
Aborted (core dumped)
-2023-07-25 13:37:09,720 - update - log - INFO - HydroMT version: 0.8.1.dev0
-2023-07-25 13:37:09,721 - update - main - INFO - Updating wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin (r).
-2023-07-25 13:37:09,721 - update - main - INFO - Output dir: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges
-2023-07-25 13:37:09,721 - update - main - INFO - User settings:
-2023-07-25 13:37:09,742 - update - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
-2023-07-25 13:37:09,742 - update - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
-2023-07-25 13:37:09,758 - update - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
-2023-07-25 13:37:09,881 - update - wflow - INFO - Reading model intbl files.
-2023-07-25 13:37:09,881 - update - wflow - INFO - Reading model table files.
-2023-07-25 13:37:09,882 - update - wflow - INFO - Reading model staticgeom files.
-2023-07-25 13:37:10,025 - update - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
-2023-07-25 13:37:10,041 - update - wflow - INFO - Model read
-2023-07-25 13:37:10,047 - update - model_api - INFO - setup_gauges.gauges_fn: test_stations.csv
-2023-07-25 13:37:10,047 - update - model_api - INFO - setup_gauges.index_col: None
-2023-07-25 13:37:10,047 - update - model_api - INFO - setup_gauges.snap_to_river: True
-2023-07-25 13:37:10,047 - update - model_api - INFO - setup_gauges.mask: None
-2023-07-25 13:37:10,047 - update - model_api - INFO - setup_gauges.snap_uparea: False
-2023-07-25 13:37:10,047 - update - model_api - INFO - setup_gauges.max_dist: 10000.0
-2023-07-25 13:37:10,047 - update - model_api - INFO - setup_gauges.wdw: 3
-2023-07-25 13:37:10,047 - update - model_api - INFO - setup_gauges.rel_error: 0.05
-2023-07-25 13:37:10,047 - update - model_api - INFO - setup_gauges.derive_subcatch: False
-2023-07-25 13:37:10,047 - update - model_api - INFO - setup_gauges.basename: test-flow
-2023-07-25 13:37:10,047 - update - model_api - INFO - setup_gauges.toml_output: csv
-2023-07-25 13:37:10,047 - update - model_api - INFO - setup_gauges.gauge_toml_header: ['Q', 'P']
-2023-07-25 13:37:10,047 - update - model_api - INFO - setup_gauges.gauge_toml_param: ['lateral.river.q_av', 'vertical.precipitation']
-2023-07-25 13:37:10,050 - update - data_catalog - INFO - DataCatalog: Getting test_stations GeoDataFrame csv data from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/test_stations.csv
-2023-07-25 13:37:10,053 - update - geodataframe - INFO - GeoDataFrame: Read csv data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
-2023-07-25 13:37:10,067 - update - wflow - INFO - 3 test-flow gauge locations found within domain
-2023-07-25 13:37:12,126 - update - wflow - INFO - Adding ['lateral.river.q_av', 'vertical.precipitation'] to csv section of toml.
-2023-07-25 13:37:12,126 - update - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges
-2023-07-25 13:37:12,127 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/wflow_sbm.toml
-2023-07-25 13:37:12,251 - update - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/staticmaps.nc
-2023-07-25 13:37:12,663 - update - wflow - INFO - Writing model staticgeom to file.
-2023-07-25 13:37:13,031 - update - wflow - INFO - Write forcing file
-2023-07-25 13:37:13,051 - update - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/inmaps.nc
-[########################################] | 100% Completed | 101.44 ms
-malloc(): unsorted double linked list corrupted
-Aborted (core dumped)
+2023-07-27 08:07:34,421 - update - log - INFO - HydroMT version: 0.8.1.dev0
+2023-07-27 08:07:34,422 - update - main - INFO - Updating wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin (r).
+2023-07-27 08:07:34,422 - update - main - INFO - Output dir: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges
+2023-07-27 08:07:34,422 - update - main - INFO - User settings:
+2023-07-27 08:07:34,444 - update - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
+2023-07-27 08:07:34,444 - update - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
+2023-07-27 08:07:34,460 - update - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
+2023-07-27 08:07:34,582 - update - wflow - INFO - Reading model intbl files.
+2023-07-27 08:07:34,583 - update - wflow - INFO - Reading model table files.
+2023-07-27 08:07:34,583 - update - wflow - INFO - Reading model staticgeom files.
+2023-07-27 08:07:34,726 - update - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
+2023-07-27 08:07:34,743 - update - wflow - INFO - Model read
+2023-07-27 08:07:34,748 - update - model_api - INFO - setup_gauges.gauges_fn: test_stations.csv
+2023-07-27 08:07:34,749 - update - model_api - INFO - setup_gauges.index_col: None
+2023-07-27 08:07:34,749 - update - model_api - INFO - setup_gauges.snap_to_river: True
+2023-07-27 08:07:34,749 - update - model_api - INFO - setup_gauges.mask: None
+2023-07-27 08:07:34,749 - update - model_api - INFO - setup_gauges.snap_uparea: False
+2023-07-27 08:07:34,749 - update - model_api - INFO - setup_gauges.max_dist: 10000.0
+2023-07-27 08:07:34,749 - update - model_api - INFO - setup_gauges.wdw: 3
+2023-07-27 08:07:34,749 - update - model_api - INFO - setup_gauges.rel_error: 0.05
+2023-07-27 08:07:34,749 - update - model_api - INFO - setup_gauges.derive_subcatch: False
+2023-07-27 08:07:34,749 - update - model_api - INFO - setup_gauges.basename: test-flow
+2023-07-27 08:07:34,749 - update - model_api - INFO - setup_gauges.toml_output: csv
+2023-07-27 08:07:34,749 - update - model_api - INFO - setup_gauges.gauge_toml_header: ['Q', 'P']
+2023-07-27 08:07:34,749 - update - model_api - INFO - setup_gauges.gauge_toml_param: ['lateral.river.q_av', 'vertical.precipitation']
+2023-07-27 08:07:34,751 - update - data_catalog - INFO - DataCatalog: Getting test_stations GeoDataFrame csv data from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/test_stations.csv
+2023-07-27 08:07:34,755 - update - geodataframe - INFO - GeoDataFrame: Read csv data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
+2023-07-27 08:07:34,768 - update - wflow - INFO - 3 test-flow gauge locations found within domain
+2023-07-27 08:07:36,836 - update - wflow - INFO - Adding ['lateral.river.q_av', 'vertical.precipitation'] to csv section of toml.
+2023-07-27 08:07:36,836 - update - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges
+2023-07-27 08:07:36,838 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/wflow_sbm.toml
+2023-07-27 08:07:36,961 - update - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/staticmaps.nc
+2023-07-27 08:07:37,372 - update - wflow - INFO - Writing model staticgeom to file.
+2023-07-27 08:07:37,746 - update - wflow - INFO - Write forcing file
+2023-07-27 08:07:37,766 - update - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/inmaps.nc
+[########################################] | 100% Completed | 101.52 ms
+
The example above means the following: run hydromt with:
@@ -677,39 +676,40 @@
-2023-07-25 13:37:16,436 - update - log - INFO - HydroMT version: 0.8.1.dev0
-2023-07-25 13:37:16,436 - update - main - INFO - Updating wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges (r+).
-2023-07-25 13:37:16,436 - update - main - INFO - Output dir: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges
-2023-07-25 13:37:16,436 - update - main - INFO - User settings:
-2023-07-25 13:37:16,457 - update - model_api - WARNING - Model dir already exists and files might be overwritten: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/staticgeoms.
-2023-07-25 13:37:16,457 - update - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
-2023-07-25 13:37:16,457 - update - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
-2023-07-25 13:37:16,475 - update - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/staticmaps.nc
-2023-07-25 13:37:16,603 - update - model_api - INFO - setup_gauges.gauges_fn: test_stations.csv
-2023-07-25 13:37:16,603 - update - model_api - INFO - setup_gauges.index_col: None
-2023-07-25 13:37:16,603 - update - model_api - INFO - setup_gauges.snap_to_river: False
-2023-07-25 13:37:16,603 - update - model_api - INFO - setup_gauges.mask: None
-2023-07-25 13:37:16,603 - update - model_api - INFO - setup_gauges.snap_uparea: False
-2023-07-25 13:37:16,603 - update - model_api - INFO - setup_gauges.max_dist: 10000.0
-2023-07-25 13:37:16,603 - update - model_api - INFO - setup_gauges.wdw: 3
-2023-07-25 13:37:16,603 - update - model_api - INFO - setup_gauges.rel_error: 0.05
-2023-07-25 13:37:16,603 - update - model_api - INFO - setup_gauges.derive_subcatch: False
-2023-07-25 13:37:16,603 - update - model_api - INFO - setup_gauges.basename: test-rain
-2023-07-25 13:37:16,603 - update - model_api - INFO - setup_gauges.toml_output: csv
-2023-07-25 13:37:16,603 - update - model_api - INFO - setup_gauges.gauge_toml_header: ['P-station']
-2023-07-25 13:37:16,603 - update - model_api - INFO - setup_gauges.gauge_toml_param: ['vertical.precipitation']
-2023-07-25 13:37:16,606 - update - wflow - INFO - Reading model staticgeom files.
-2023-07-25 13:37:16,753 - update - data_catalog - INFO - DataCatalog: Getting test_stations GeoDataFrame csv data from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/test_stations.csv
-2023-07-25 13:37:16,756 - update - geodataframe - INFO - GeoDataFrame: Read csv data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
-2023-07-25 13:37:16,770 - update - wflow - INFO - 3 test-rain gauge locations found within domain
-2023-07-25 13:37:17,851 - update - wflow - INFO - Adding ['vertical.precipitation'] to csv section of toml.
-2023-07-25 13:37:17,851 - update - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges
-2023-07-25 13:37:17,851 - update - data_catalog - INFO - Parsing data catalog from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/hydromt_data.yml
-2023-07-25 13:37:17,853 - update - data_catalog - WARNING - Overwriting data source test_stations.
-2023-07-25 13:37:17,854 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/wflow_sbm.toml
-2023-07-25 13:37:17,979 - update - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/staticmaps.nc
-2023-07-25 13:37:18,398 - update - wflow - INFO - Writing model staticgeom to file.
-
+2023-07-27 08:07:41,042 - update - log - INFO - HydroMT version: 0.8.1.dev0
+2023-07-27 08:07:41,042 - update - main - INFO - Updating wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges (r+).
+2023-07-27 08:07:41,042 - update - main - INFO - Output dir: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges
+2023-07-27 08:07:41,042 - update - main - INFO - User settings:
+2023-07-27 08:07:41,064 - update - model_api - WARNING - Model dir already exists and files might be overwritten: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/staticgeoms.
+2023-07-27 08:07:41,065 - update - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
+2023-07-27 08:07:41,065 - update - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
+2023-07-27 08:07:41,082 - update - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/staticmaps.nc
+2023-07-27 08:07:41,211 - update - model_api - INFO - setup_gauges.gauges_fn: test_stations.csv
+2023-07-27 08:07:41,211 - update - model_api - INFO - setup_gauges.index_col: None
+2023-07-27 08:07:41,211 - update - model_api - INFO - setup_gauges.snap_to_river: False
+2023-07-27 08:07:41,211 - update - model_api - INFO - setup_gauges.mask: None
+2023-07-27 08:07:41,211 - update - model_api - INFO - setup_gauges.snap_uparea: False
+2023-07-27 08:07:41,211 - update - model_api - INFO - setup_gauges.max_dist: 10000.0
+2023-07-27 08:07:41,211 - update - model_api - INFO - setup_gauges.wdw: 3
+2023-07-27 08:07:41,211 - update - model_api - INFO - setup_gauges.rel_error: 0.05
+2023-07-27 08:07:41,211 - update - model_api - INFO - setup_gauges.derive_subcatch: False
+2023-07-27 08:07:41,211 - update - model_api - INFO - setup_gauges.basename: test-rain
+2023-07-27 08:07:41,211 - update - model_api - INFO - setup_gauges.toml_output: csv
+2023-07-27 08:07:41,212 - update - model_api - INFO - setup_gauges.gauge_toml_header: ['P-station']
+2023-07-27 08:07:41,212 - update - model_api - INFO - setup_gauges.gauge_toml_param: ['vertical.precipitation']
+2023-07-27 08:07:41,214 - update - wflow - INFO - Reading model staticgeom files.
+2023-07-27 08:07:41,360 - update - data_catalog - INFO - DataCatalog: Getting test_stations GeoDataFrame csv data from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/test_stations.csv
+2023-07-27 08:07:41,363 - update - geodataframe - INFO - GeoDataFrame: Read csv data and clip to geom (epsg:4326) [11.775, 45.804, 12.745, 46.690].
+2023-07-27 08:07:41,377 - update - wflow - INFO - 3 test-rain gauge locations found within domain
+2023-07-27 08:07:42,445 - update - wflow - INFO - Adding ['vertical.precipitation'] to csv section of toml.
+2023-07-27 08:07:42,446 - update - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges
+2023-07-27 08:07:42,446 - update - data_catalog - INFO - Parsing data catalog from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/hydromt_data.yml
+2023-07-27 08:07:42,447 - update - data_catalog - WARNING - Overwriting data source test_stations.
+2023-07-27 08:07:42,448 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/wflow_sbm.toml
+2023-07-27 08:07:42,572 - update - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_gauges/staticmaps.nc
+2023-07-27 08:07:42,992 - update - wflow - INFO - Writing model staticgeom to file.
+malloc(): mismatching next->prev_size (unsorted)
+Aborted (core dumped)
The example above means the following: run hydromt with:
diff --git a/dev/_examples/update_model_landuse.html b/dev/_examples/update_model_landuse.html index 6a765775..9f953b9c 100644 --- a/dev/_examples/update_model_landuse.html +++ b/dev/_examples/update_model_landuse.html @@ -617,49 +617,49 @@
-2023-07-25 13:37:33,078 - update - log - INFO - HydroMT version: 0.8.1.dev0
-2023-07-25 13:37:33,078 - update - main - INFO - Updating wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin (r).
-2023-07-25 13:37:33,078 - update - main - INFO - Output dir: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_corine
-2023-07-25 13:37:33,078 - update - main - INFO - User settings:
-2023-07-25 13:37:33,156 - update - data_catalog - INFO - Reading data catalog artifact_data v0.0.8 from archive
-2023-07-25 13:37:33,156 - update - data_catalog - INFO - Parsing data catalog from /home/runner/.hydromt_data/artifact_data/v0.0.8/data_catalog.yml
-2023-07-25 13:37:33,233 - update - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
-2023-07-25 13:37:33,233 - update - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
-2023-07-25 13:37:33,248 - update - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
-2023-07-25 13:37:33,371 - update - wflow - INFO - Reading model intbl files.
-2023-07-25 13:37:33,372 - update - wflow - INFO - Reading model table files.
-2023-07-25 13:37:33,372 - update - wflow - INFO - Reading model staticgeom files.
-2023-07-25 13:37:33,514 - update - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
-2023-07-25 13:37:33,531 - update - wflow - INFO - Model read
-2023-07-25 13:37:33,536 - update - model_api - INFO - setup_lulcmaps.lulc_fn: corine
-2023-07-25 13:37:33,536 - update - model_api - INFO - setup_lulcmaps.lulc_mapping_fn: None
-2023-07-25 13:37:33,536 - update - model_api - INFO - setup_lulcmaps.lulc_vars: ['landuse', 'Kext', 'N', 'PathFrac', 'RootingDepth', 'Sl', 'Swood', 'WaterFrac']
-2023-07-25 13:37:33,536 - update - wflow - INFO - Preparing LULC parameter maps.
-2023-07-25 13:37:33,540 - update - data_catalog - INFO - DataCatalog: Getting corine RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/corine.tif
-2023-07-25 13:37:33,644 - update - data_catalog - INFO - DataCatalog: Getting corine_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/lulc/corine_mapping.csv
-2023-07-25 13:37:33,644 - update - dataframe - INFO - DataFrame: Read csv data.
-2023-07-25 13:37:33,919 - update - landuse - INFO - Deriving landuse using nearest resampling (nodata=999).
-2023-07-25 13:37:34,118 - update - landuse - INFO - Deriving Kext using average resampling (nodata=-999.0).
-2023-07-25 13:37:34,276 - update - landuse - INFO - Deriving N using average resampling (nodata=-999.0).
-2023-07-25 13:37:34,431 - update - landuse - INFO - Deriving PathFrac using average resampling (nodata=-999.0).
-2023-07-25 13:37:34,583 - update - landuse - INFO - Deriving RootingDepth using average resampling (nodata=-999.0).
-2023-07-25 13:37:34,733 - update - landuse - INFO - Deriving Sl using average resampling (nodata=-999.0).
-2023-07-25 13:37:34,885 - update - landuse - INFO - Deriving Swood using average resampling (nodata=-999.0).
-2023-07-25 13:37:35,039 - update - landuse - INFO - Deriving WaterFrac using average resampling (nodata=-999.0).
-2023-07-25 13:37:35,193 - update - model_api - WARNING - Replacing staticmap: wflow_landuse
-2023-07-25 13:37:35,195 - update - model_api - WARNING - Replacing staticmap: Kext
-2023-07-25 13:37:35,196 - update - model_api - WARNING - Replacing staticmap: N
-2023-07-25 13:37:35,198 - update - model_api - WARNING - Replacing staticmap: PathFrac
-2023-07-25 13:37:35,200 - update - model_api - WARNING - Replacing staticmap: RootingDepth
-2023-07-25 13:37:35,202 - update - model_api - WARNING - Replacing staticmap: Sl
-2023-07-25 13:37:35,204 - update - model_api - WARNING - Replacing staticmap: Swood
-2023-07-25 13:37:35,205 - update - model_api - WARNING - Replacing staticmap: WaterFrac
-2023-07-25 13:37:35,207 - update - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_corine
-2023-07-25 13:37:35,210 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_corine/wflow_sbm.toml
-2023-07-25 13:37:35,321 - update - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_corine/staticmaps.nc
-2023-07-25 13:37:35,588 - update - wflow - INFO - Write forcing file
-2023-07-25 13:37:35,608 - update - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_corine/inmaps.nc
-[########################################] | 100% Completed | 100.86 ms
+2023-07-27 08:07:57,984 - update - log - INFO - HydroMT version: 0.8.1.dev0
+2023-07-27 08:07:57,984 - update - main - INFO - Updating wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin (r).
+2023-07-27 08:07:57,984 - update - main - INFO - Output dir: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_corine
+2023-07-27 08:07:57,985 - update - main - INFO - User settings:
+2023-07-27 08:07:58,054 - update - data_catalog - INFO - Reading data catalog artifact_data v0.0.8 from archive
+2023-07-27 08:07:58,054 - update - data_catalog - INFO - Parsing data catalog from /home/runner/.hydromt_data/artifact_data/v0.0.8/data_catalog.yml
+2023-07-27 08:07:58,131 - update - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
+2023-07-27 08:07:58,131 - update - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
+2023-07-27 08:07:58,147 - update - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
+2023-07-27 08:07:58,269 - update - wflow - INFO - Reading model intbl files.
+2023-07-27 08:07:58,269 - update - wflow - INFO - Reading model table files.
+2023-07-27 08:07:58,270 - update - wflow - INFO - Reading model staticgeom files.
+2023-07-27 08:07:58,410 - update - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
+2023-07-27 08:07:58,427 - update - wflow - INFO - Model read
+2023-07-27 08:07:58,432 - update - model_api - INFO - setup_lulcmaps.lulc_fn: corine
+2023-07-27 08:07:58,432 - update - model_api - INFO - setup_lulcmaps.lulc_mapping_fn: None
+2023-07-27 08:07:58,432 - update - model_api - INFO - setup_lulcmaps.lulc_vars: ['landuse', 'Kext', 'N', 'PathFrac', 'RootingDepth', 'Sl', 'Swood', 'WaterFrac']
+2023-07-27 08:07:58,432 - update - wflow - INFO - Preparing LULC parameter maps.
+2023-07-27 08:07:58,436 - update - data_catalog - INFO - DataCatalog: Getting corine RasterDataset raster data from /home/runner/.hydromt_data/artifact_data/v0.0.8/corine.tif
+2023-07-27 08:07:58,537 - update - data_catalog - INFO - DataCatalog: Getting corine_mapping_default DataFrame csv data from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/lulc/corine_mapping.csv
+2023-07-27 08:07:58,537 - update - dataframe - INFO - DataFrame: Read csv data.
+2023-07-27 08:07:58,812 - update - landuse - INFO - Deriving landuse using nearest resampling (nodata=999).
+2023-07-27 08:07:59,000 - update - landuse - INFO - Deriving Kext using average resampling (nodata=-999.0).
+2023-07-27 08:07:59,156 - update - landuse - INFO - Deriving N using average resampling (nodata=-999.0).
+2023-07-27 08:07:59,308 - update - landuse - INFO - Deriving PathFrac using average resampling (nodata=-999.0).
+2023-07-27 08:07:59,461 - update - landuse - INFO - Deriving RootingDepth using average resampling (nodata=-999.0).
+2023-07-27 08:07:59,613 - update - landuse - INFO - Deriving Sl using average resampling (nodata=-999.0).
+2023-07-27 08:07:59,764 - update - landuse - INFO - Deriving Swood using average resampling (nodata=-999.0).
+2023-07-27 08:07:59,918 - update - landuse - INFO - Deriving WaterFrac using average resampling (nodata=-999.0).
+2023-07-27 08:08:00,070 - update - model_api - WARNING - Replacing staticmap: wflow_landuse
+2023-07-27 08:08:00,072 - update - model_api - WARNING - Replacing staticmap: Kext
+2023-07-27 08:08:00,074 - update - model_api - WARNING - Replacing staticmap: N
+2023-07-27 08:08:00,076 - update - model_api - WARNING - Replacing staticmap: PathFrac
+2023-07-27 08:08:00,078 - update - model_api - WARNING - Replacing staticmap: RootingDepth
+2023-07-27 08:08:00,079 - update - model_api - WARNING - Replacing staticmap: Sl
+2023-07-27 08:08:00,081 - update - model_api - WARNING - Replacing staticmap: Swood
+2023-07-27 08:08:00,083 - update - model_api - WARNING - Replacing staticmap: WaterFrac
+2023-07-27 08:08:00,085 - update - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_corine
+2023-07-27 08:08:00,088 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_corine/wflow_sbm.toml
+2023-07-27 08:08:00,197 - update - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_corine/staticmaps.nc
+2023-07-27 08:08:00,464 - update - wflow - INFO - Write forcing file
+2023-07-27 08:08:00,484 - update - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_corine/inmaps.nc
+[########################################] | 100% Completed | 102.02 ms
malloc(): mismatching next->prev_size (unsorted)
Aborted (core dumped)
write_forcing
([fn_out, freq_out, chunksize, ...])
write forcing at fn_out in model ready format.
write forcing at fn_out
in model ready format.
write_geoms
([fn])
Write model geometries to a vector file (by default GeoJSON) at <root>/<fn>.
Set the geometries.
This method will be deprecated in future versions,
-use set_geoms()
.
set_geoms()
.
Setup area map from vector data to save wflow outputs for specific area. -Adds model layer: -* col2raster map: output area data map -:param area_fn: Name of vector data corresponding to wflow output area. -:type area_fn: str -:param col2raster: Name of the column from the vector file to rasterize. -:type col2raster: str -:param nodata: Nodata value to use when rasterizing. Should match the dtype of col2raster. By default -1. -:type nodata: int/float, optional
+Setup area map from vector data to save wflow outputs for specific area.
+Adds model layer:
+col2raster map: output area data map
This components adds floodplain information to the model schematistation. The user can
-define what type of floodplains are required (1D or 2D), through the floodplain_type
+define what type of floodplains are required (1D or 2D), through the floodplain_type
argument.
If floodplain_type is set to “1d”, a floodplain profile is derived for every river +
If floodplain_type
is set to “1d”, a floodplain profile is derived for every river
cell. It adds a map with floodplain volume per flood depth, which is used in the wflow
1D floodplain schematisation.
Note, it is important to use the same river uparea value as used in the setup_rivers +
Note, it is important to use the same river uparea value as used in the setup_rivers()
method.
If floodplain_type is set to “2d”, this component adds a hydrologically conditioned +
If floodplain_type
is set to “2d”, this component adds a hydrologically conditioned
elevation (hydrodem) map for land routing (local-inertial). For this options, landcells
need to be conditioned to D4 flow directions otherwise pits may remain in the land
cells.
setup_rivers()
to be executed beforehand (with river_routing
set to
+“local-inertial”).
Adds model layers:
floodplain_volume map: map with floodplain volumes, has flood depth as third
floodplain_volume map: map with floodplain volumes, has flood depth as third +dimension [m3] (for 1D floodplains)
hydrodem map: hydrologically conditioned elevation [m+REF] (for 2D floodplains)
dimension [m3] (for 1D floodplains) -* hydrodem map: hydrologically conditioned elevation [m+REF] (for 2D floodplains)
See also
-hydromt.workflows.river_floodplain_volume
, hydromt.flw.dem_adjust
, pyflwdir.FlwdirRaster.dem_adjust
, hydromt.setup_rivers
workflows.river_floodplain_volume
, hydromt.flw.dem_adjust
, pyflwdir.FlwdirRaster.dem_adjust
, setup_rivers
wdw
+an uparea
[km2] column. The closest value will be looked for in a cell window of size wdw
and the difference between the gauge and the closest value should be smaller than rel_error
.
If derive_subcatch
is set to True, an additional subcatch map is derived from
diff --git a/dev/_generated/hydromt_wflow.WflowModel.setup_lulcmaps.html b/dev/_generated/hydromt_wflow.WflowModel.setup_lulcmaps.html
index b625f133..bc19227e 100644
--- a/dev/_generated/hydromt_wflow.WflowModel.setup_lulcmaps.html
+++ b/dev/_generated/hydromt_wflow.WflowModel.setup_lulcmaps.html
@@ -588,7 +588,7 @@
This component sets the all river parameter maps.
The river mask is defined by all cells with a mimimum upstream area threshold -river_upa [km2].
+river_upa
[km2].
The river length is defined as the distance from the subgrid outlet pixel to
-the next upstream subgrid outlet pixel. The min_rivlen_ratio is the minimum
+the next upstream subgrid outlet pixel. The min_rivlen_ratio
is the minimum
global river length to avg. cell resolution ratio and is used as a threshold in
window based smoothing of river length.
The river slope is derived from the subgrid elevation difference between pixels at a -half distance slope_len [m] up- and downstream from the subgrid outlet pixel.
+half distanceslope_len
[m] up- and downstream from the subgrid outlet pixel.
The river manning roughness coefficient is derived based on reclassification -of the streamorder map using a lookup table rivman_mapping_fn.
-The river width is derived from the nearest river segment in river_geom_fn.
+of the streamorder map using a lookup table rivman_mapping_fn
.
The river width is derived from the nearest river segment in river_geom_fn
.
Data gaps are filled by the nearest valid upstream value and averaged along
-the flow directions over a length smooth_len [m]
The river depth is calculated using the rivdph_method, by default powlaw:
+the flow directions over a length smooth_len
[m]
The river depth is calculated using the rivdph_method
, by default powlaw:
h = hc*Qbf**hp, which is based on qbankfull discharge from the nearest river
-segment in river_geom_fn and takes optional arguments for the hc
+segment in river_geom_fn
and takes optional arguments for the hc
(default = 0.27) and hp (default = 0.30) parameters. For other methods see
hydromt.workflows.river_depth()
.
If river_routing is set to “local-inertial”, the bankfull elevantion map can be +
If river_routing
is set to “local-inertial”, the bankfull elevantion map can be
conditioned based on the average cell elevation (“wflow_dem”) or subgrid outlet pixel
elevation (“dem_subgrid”). The subgrid elevation might provide a better representation
of the river elevation profile, however in combination with local-inertial land routing
-(see hydromt.setup_floodplains) the subgrid elevation will likely overestimate the
+(see setup_floodplains()
) the subgrid elevation will likely overestimate the
floodplain storage capacity. Note that the same input elevation map should be used for
river bankfull elevation and land elevation when using local-inertial land routing.
Adds model layers:
@@ -654,7 +654,7 @@See also
-workflows.river_bathymetry
, hydromt.workflows.river_depth
, pyflwdir.FlwdirRaster.river_depth
, hydromt.setup_floodplains
workflows.river_bathymetry
, hydromt.workflows.river_depth
, pyflwdir.FlwdirRaster.river_depth
, setup_floodplains
This component adds data variable(s) from raster_fn
to staticmaps object.
If raster is a dataset, all variables will be added unless variables
list is specified.
The config toml can also be updated to include the new maps using wflow_variables
.
Adds model layers: -* raster.name or variables staticmaps: data from raster_fn
+Adds model layers:
+raster.name or variables staticmaps: data from raster_fn
write forcing at fn_out in model ready format.
-If no fn_out path is provided and path_forcing from the wflow toml exists, +
write forcing at fn_out
in model ready format.
If no fn_out
path is provided and path_forcing from the wflow toml exists,
the following default filenames are used:
diff --git a/dev/_generated/hydromt_wflow.WflowSedimentModel.html b/dev/_generated/hydromt_wflow.WflowSedimentModel.html index 5ba16a7c..da7d17f8 100644 --- a/dev/_generated/hydromt_wflow.WflowSedimentModel.html +++ b/dev/_generated/hydromt_wflow.WflowSedimentModel.html @@ -803,7 +803,7 @@
hydromt_wflow.WflowSedimentModel
-
write_forcing
([fn_out, freq_out, chunksize, ...])+ write forcing at fn_out in model ready format.
write forcing at
fn_out
in model ready format.
write_geoms
([fn])
Write model geometries to a vector file (by default GeoJSON) at <root>/<fn>.
Set the geometries.
This method will be deprecated in future versions,
-use set_geoms()
.
set_geoms()
.
Setup area map from vector data to save wflow outputs for specific area. -Adds model layer: -* col2raster map: output area data map -:param area_fn: Name of vector data corresponding to wflow output area. -:type area_fn: str -:param col2raster: Name of the column from the vector file to rasterize. -:type col2raster: str -:param nodata: Nodata value to use when rasterizing. Should match the dtype of col2raster. By default -1. -:type nodata: int/float, optional
+Setup area map from vector data to save wflow outputs for specific area.
+Adds model layer:
+col2raster map: output area data map
This components sets the default gauge map based on basin outlets.
---Adds model layers:
+Adds model layers:
-
wflow_gauges map: gauge IDs map from catchment outlets [-]
gauges geom: polygon of catchment outlets
-
-- river_onlybool, optional
- -
Only derive outlet locations if they are located on a river instead of locations for all catchments, by default True.
-
--One of [‘csv’, ‘netcdf’, None] to update [csv] or [netcdf] section of wflow toml file or do nothing. By default, ‘csv’.
-
Save specific model parameters in csv section. This option defines the header of the csv file./ -By default saves TSS (for lateral.river.SSconc).
-Save specific model parameters in csv section. This option defines the wflow variable corresponding to the/ -names in gauge_toml_header. By default saves lateral.river.SSconc (for TSS).
-river_only (bool, optional) – Only derive outlet locations if they are located on a river instead of locations for all catchments, by default True.
toml_output (str, optional) – One of [‘csv’, ‘netcdf’, None] to update [csv] or [netcdf] section of wflow toml file or do nothing. By default, ‘csv’.
gauge_toml_header (list, optional) – Save specific model parameters in csv section. This option defines the header of the csv file./ +By default saves TSS (for lateral.river.SSconc).
gauge_toml_param (list, optional) – Save specific model parameters in csv section. This option defines the wflow variable corresponding to the/ +names in gauge_toml_header. By default saves lateral.river.SSconc (for TSS).
See also
-hydromt.WflowModel.setup_rivers
variables
list is specified.
The config toml can also be updated to include the new maps using wflow_variables
.
-Adds model layers: -* raster.name or variables staticmaps: data from raster_fn
+Adds model layers:
+raster.name or variables staticmaps: data from raster_fn
write forcing at fn_out in model ready format.
-If no fn_out path is provided and path_forcing from the wflow toml exists, +
write forcing at fn_out
in model ready format.
If no fn_out
path is provided and path_forcing from the wflow toml exists,
the following default filenames are used:
diff --git a/dev/_generated/hydromt_wflow.workflows.glacierattrs.html b/dev/_generated/hydromt_wflow.workflows.glacierattrs.html index ac1e761e..7cad66b3 100644 --- a/dev/_generated/hydromt_wflow.workflows.glacierattrs.html +++ b/dev/_generated/hydromt_wflow.workflows.glacierattrs.html @@ -586,23 +586,27 @@
hydromt_wflow.workflows.glacierattrs hydromt_wflow.workflows.glacierattrs(gdf, TT=1.3, Cfmax=5.3, SIfrac=0.002, id_column='simple_id', logger=<Logger hydromt_wflow.workflows.glaciers (WARNING)>)[source]#
- diff --git a/dev/_generated/hydromt_wflow.workflows.glaciermaps.html b/dev/_generated/hydromt_wflow.workflows.glaciermaps.html index 6193f879..2b0523d9 100644 --- a/dev/_generated/hydromt_wflow.workflows.glaciermaps.html +++ b/dev/_generated/hydromt_wflow.workflows.glaciermaps.html @@ -586,19 +586,25 @@
Returns glacier intbls (see list below).
-The following glacier intbls are calculated: - glacTempThresh: glacier temperature threshold [°C] - glacCfmax: glacier melting factor [mm/(°C*day)] - glacSIfrac: fraction of snowpack converted into ice and added to glacier storage [-] -:param gdf: GeoDataFrame containing glacier geometries and attributes. -:type gdf: geopandas.GeoDataFrame -:param TT: Default value for glacier temperature threshold. -:type TT: float, optional -:param Cfmax: Default value for glacier melting factor. -:type Cfmax: float, optional -:param SIfrac: Default value for fraction of snowpack converted into ice and added to glacier storage. -:type SIfrac: float, optional -:param id_column: Column used for the glacier IDs, see data/data_sources.yml. -:type id_column: str, optional, one of “simple_id”, “C3S_id”, “RGI_id”, or “GLIMS_id”
+The following glacier intbls are calculated:
++
- +
glacTempThresh: glacier temperature threshold [°C]
- +
glacCfmax: glacier melting factor [mm/(°C*day)]
- +
glacSIfrac: fraction of snowpack converted into ice and added to glacier storage [-]
-
- Returns:
-df_out – DataFrame containing glacier attributes.
+- Parameters:
+- +
+
+- +
gdf (geopandas.GeoDataFrame) – GeoDataFrame containing glacier geometries and attributes.
- +
TT (float, optional) – Default value for glacier temperature threshold.
- +
Cfmax (float, optional) – Default value for glacier melting factor.
- +
SIfrac (float, optional) – Default value for fraction of snowpack converted into ice and added to glacier storage.
- +
id_column (str, optional, one of "simple_id", "C3S_id", "RGI_id", or "GLIMS_id") – Column used for the glacier IDs, see data/data_sources.yml.
- Returns:
+- -
df_out – DataFrame containing glacier attributes.
- Return type:
-- +
- Return type:
+hydromt_wflow.workflows.glaciermaps hydromt_wflow.workflows.glaciermaps(gdf, ds_like, id_column='simple_id', elevtn_name='elevtn', logger=<Logger hydromt_wflow.workflows.glaciers (WARNING)>)[source]#
- diff --git a/dev/_generated/hydromt_wflow.workflows.lakeattrs.html b/dev/_generated/hydromt_wflow.workflows.lakeattrs.html index 833da4a4..f2d69a89 100644 --- a/dev/_generated/hydromt_wflow.workflows.lakeattrs.html +++ b/dev/_generated/hydromt_wflow.workflows.lakeattrs.html @@ -587,7 +587,20 @@
Returns glacier maps (see list below) at model resolution.
-The following glacier maps are calculated: - wflow_glacierareas: glacier IDs [ID] - wflow_glacierfrac: area fraction of glacier per cell [-] - wflow_glacierstore: storage (volume) of glacier per cell [mm] -:param gdf: GeoDataFrame containing glacier geometries and attributes. -:type gdf: geopandas.GeoDataFrame -:param ds_like: Dataset at model resolution. -:type ds_like: xarray.DataArray -:param id_column: Column used for the glacier IDs, see data/data_sources.yml. -:type id_column: str, optional, one of “simple_id”, “C3S_id”, “RGI_id”, or “GLIMS_id”
+The following glacier maps are calculated:
++
- +
wflow_glacierareas: glacier IDs [ID]
- +
wflow_glacierfrac: area fraction of glacier per cell [-]
- +
wflow_glacierstore: storage (volume) of glacier per cell [mm]
-
- Returns:
-ds_out – Dataset containing gridded glacier data
+- Parameters:
+- +
+
+- +
gdf (geopandas.GeoDataFrame) – GeoDataFrame containing glacier geometries and attributes.
- +
ds_like (xarray.DataArray) – Dataset at model resolution.
- +
id_column (str, optional, one of "simple_id", "C3S_id", "RGI_id", or "GLIMS_id") – Column used for the glacier IDs, see data/data_sources.yml.
- Returns:
+- -
ds_out – Dataset containing gridded glacier data
- Return type:
-- +
- Return type:
+hydromt_wflow.workflows.lakeattrshydromt_wflow.workflows.lakeattrs(ds: ~xarray.core.dataset.Dataset, gdf: ~geopandas.geodataframe.GeoDataFrame, rating_dict: dict = {}, add_maxstorage: bool = False, logger=<Logger hydromt_wflow.workflows.waterbodies (WARNING)>)[source]#
Returns lake attributes (see list below) needed for modelling. If rating_dict is not empty, prepares also rating tables for wflow
-The following reservoir attributes are calculated: - waterbody_id : waterbody id - LakeArea : lake area [m2] - LakeAvgLevel: lake average level [m] - LakeAvgOut: lake average outflow [m3/s] - Lake_b: lake rating curve coefficient [-] - Lake_e: lake rating curve exponent [-] - LakeStorFunc: option to compute storage curve [-] - LakeOutflowFunc: option to compute rating curve [-] - LakeThreshold: minimium threshold for lake outflow [m] - LinkedLakeLocs: id of linked lake location if any - LakeMaxStorage: maximum storage [m3] (optional)
+The following reservoir attributes are calculated:
++
- +
waterbody_id : waterbody id
- +
LakeArea : lake area [m2]
- +
LakeAvgLevel: lake average level [m]
- +
LakeAvgOut: lake average outflow [m3/s]
- +
Lake_b: lake rating curve coefficient [-]
- +
Lake_e: lake rating curve exponent [-]
- +
LakeStorFunc: option to compute storage curve [-]
- +
LakeOutflowFunc: option to compute rating curve [-]
- +
LakeThreshold: minimium threshold for lake outflow [m]
- +
LinkedLakeLocs: id of linked lake location if any
- +
LakeMaxStorage: maximum storage [m3] (optional)
- Parameters:
diff --git a/dev/_generated/hydromt_wflow.workflows.landuse.html b/dev/_generated/hydromt_wflow.workflows.landuse.html index 9ebd9b51..65ea6965 100644 --- a/dev/_generated/hydromt_wflow.workflows.landuse.html +++ b/dev/_generated/hydromt_wflow.workflows.landuse.html @@ -588,7 +588,10 @@
hydromt_wflow.workflows.landuse +
- +
TODO
- Parameters:
diff --git a/dev/_generated/hydromt_wflow.workflows.reservoirattrs.html b/dev/_generated/hydromt_wflow.workflows.reservoirattrs.html index 3e9601d7..edeaafb1 100644 --- a/dev/_generated/hydromt_wflow.workflows.reservoirattrs.html +++ b/dev/_generated/hydromt_wflow.workflows.reservoirattrs.html @@ -588,17 +588,22 @@
hydromt_wflow.workflows.reservoirattrs +
- +
resmaxvolume : reservoir maximum volume [m3]
- +
resarea : reservoir area [m2]
- +
resdemand : reservoir demand flow [m3/s]
- +
resmaxrelease : reservoir maximum release flow [m3/s]
- +
resfullfrac : reservoir targeted full volume fraction [m3/m3]
- +
resminfrac : reservoir targeted minimum volume fraction [m3/m3]
- Parameters:
+
diff --git a/dev/_generated/hydromt_wflow.workflows.river.html b/dev/_generated/hydromt_wflow.workflows.river.html index 735c450f..7ae8fa7d 100644 --- a/dev/_generated/hydromt_wflow.workflows.river.html +++ b/dev/_generated/hydromt_wflow.workflows.river.html @@ -586,9 +586,15 @@- +
gdf (geopandas.GeoDataFrame) – GeoDataFrame containing reservoirs geometries and attributes.
timeseries_fn (str, optional) – Name of database from which time series of reservoir surface water area will be retrieved. +Currently available: [‘jrc’, ‘gww’] +Defaults to Deltares’ Global Water Watch database.
perc_norm (int, optional) – Percentile for normal (operational) surface area
perc_min (int, optional) – Percentile for minimal (operational) surface area
hydromt_wflow.workflows.river hydromt_wflow.workflows.river(ds, ds_model=None, river_upa=30.0, slope_len=2000.0, min_rivlen_ratio=0.0, channel_dir='up', logger=<Logger hydromt_wflow.workflows.river (WARNING)>)[source]#
Returns river maps
-The output maps are: - rivmsk : river mask based on upstream area threshold on upstream area - rivlen : river length [m] - rivslp : smoothed river slope [m/m] - rivzs : elevation of the river bankfull height based on pixel outlet -- rivwth : river width at pixel outlet (if in ds) -- qbankfull : bankfull discharge at pixel outlet (if in ds)
+The output maps are:
++
- +
rivmsk : river mask based on upstream area threshold on upstream area
- +
rivlen : river length [m]
- +
rivslp : smoothed river slope [m/m]
- +
rivzs : elevation of the river bankfull height based on pixel outlet
- +
rivwth : river width at pixel outlet (if in ds)
- +
qbankfull : bankfull discharge at pixel outlet (if in ds)
- Parameters:
diff --git a/dev/_generated/hydromt_wflow.workflows.soilgrids.html b/dev/_generated/hydromt_wflow.workflows.soilgrids.html index f3c127d0..e5bfaacb 100644 --- a/dev/_generated/hydromt_wflow.workflows.soilgrids.html +++ b/dev/_generated/hydromt_wflow.workflows.soilgrids.html @@ -593,12 +593,29 @@
hydromt_wflow.workflows.soilgridshttps://doi.org/10.5194/soil-2020-65 -
-
+- The following soil parameter maps are calculated: - thetaSaverage saturated soil water content [m3/m3] - thetaRaverage residual water content [m3/m3] - KsatVervertical saturated hydraulic conductivity at soil surface [mm/day] - SoilThicknesssoil thickness [mm] - SoilMinThicknessminimum soil thickness [mm] (equal to SoilThickness) - Mmodel parameter [mm] that controls exponential decline of KsatVer with soil depth
- -
(fitted with curve_fit (scipy.optimize)), bounds of M are checked - M_ : model parameter [mm] that controls exponential decline of KsatVer with soil depth -(fitted with numpy linalg regression), bounds of M_`are checked - `M_original : M without checking bounds - M_original_ : M_`without checking bounds - `f : scaling parameter controlling the decline of KsatVer [mm-1] (fitted with curve_fit (scipy.optimize)), bounds are checked - f_ : scaling parameter controlling the decline of KsatVer [mm-1] (fitted with numpy linalg regression), bounds are checked - c_0 : Brooks Corey coefficient [-] based on pore size distribution index at depth -1st soil layer (100 mm) wflow_sbm - c_1 : idem c_0 at depth 2nd soil layer (400 mm) wflow_sbm - c_2 : idem c_0 at depth 3rd soil layer (1200 mm) wflow_sbm - c_3 : idem c_0 at depth 4th soil layer (> 1200 mm) wflow_sbm - KsatVer_[z]cm : KsatVer [mm/day] at soil depths [z] of SoilGrids data [0.0, 5.0, 15.0, 30.0, 60.0, 100.0, 200.0] - wflow_soil : USDA Soil texture based on percentage clay, silt, sand mapping: [1:Clay, 2:Silty Clay, 3:Silty Clay-Loam, 4:Sandy Clay, 5:Sandy Clay-Loam, 6:Clay-Loam, 7:Silt, 8:Silt-Loam, 9:Loam, 10:Sand, 11: Loamy Sand, 12:Sandy Loam]
-The following soil parameter maps are calculated:
++
- +
thetaS : average saturated soil water content [m3/m3]
- +
thetaR : average residual water content [m3/m3]
- +
KsatVer : vertical saturated hydraulic conductivity at soil surface [mm/day]
- +
SoilThickness : soil thickness [mm]
- +
SoilMinThickness : minimum soil thickness [mm] (equal to SoilThickness)
- +
M : model parameter [mm] that controls exponential decline of KsatVer with soil depth +(fitted with curve_fit (scipy.optimize)), bounds of M are checked
- +
M_ : model parameter [mm] that controls exponential decline of KsatVer with soil depth +(fitted with numpy linalg regression), bounds of M_ are checked
- +
M_original : M without checking bounds
- +
M_original_ : M_ without checking bounds
- +
f : scaling parameter controlling the decline of KsatVer [mm-1] (fitted with curve_fit (scipy.optimize)), bounds are checked
- +
f_ : scaling parameter controlling the decline of KsatVer [mm-1] (fitted with numpy linalg regression), bounds are checked
- +
c_0 : Brooks Corey coefficient [-] based on pore size distribution index at depth 1st +soil layer (100 mm) wflow_sbm
- +
c_1 : idem c_0 at depth 2nd soil layer (400 mm) wflow_sbm
- +
c_2 : idem c_0 at depth 3rd soil layer (1200 mm) wflow_sbm
- +
c_3 : idem c_0 at depth 4th soil layer (> 1200 mm) wflow_sbm
- +
KsatVer_[z]cm : KsatVer [mm/day] at soil depths [z] of SoilGrids data [0.0, 5.0, 15.0, 30.0, 60.0, 100.0, 200.0]
- +
wflow_soil : USDA Soil texture based on percentage clay, silt, sand mapping: [1:Clay, 2:Silty Clay, 3:Silty Clay-Loam, 4:Sandy Clay, 5:Sandy Clay-Loam, 6:Clay-Loam, 7:Silt, 8:Silt-Loam, 9:Loam, 10:Sand, 11: Loamy Sand, 12:Sandy Loam]
diff --git a/dev/_generated/hydromt_wflow.workflows.topography.html b/dev/_generated/hydromt_wflow.workflows.topography.html index cc8c159c..fa52457d 100644 --- a/dev/_generated/hydromt_wflow.workflows.topography.html +++ b/dev/_generated/hydromt_wflow.workflows.topography.html @@ -587,20 +587,23 @@
- Parameters:
diff --git a/dev/_generated/hydromt_wflow.workflows.soilgrids_sediment.html b/dev/_generated/hydromt_wflow.workflows.soilgrids_sediment.html index 8d838d76..f9c91bfd 100644 --- a/dev/_generated/hydromt_wflow.workflows.soilgrids_sediment.html +++ b/dev/_generated/hydromt_wflow.workflows.soilgrids_sediment.html @@ -587,19 +587,27 @@
hydromt_wflow.workflows.soilgrids_sedimenthydromt_wflow.workflows.soilgrids_sediment(ds, ds_like, usleK_method, logger=<Logger hydromt_wflow.workflows.soilgrids (WARNING)>)[source]#
Returns soil parameter maps for sediment modelling at model resolution based on soil properties from SoilGrids dataset.
-The following soil parameter maps are calculated: - PercentClay: clay content of the topsoil [%] - PercentSilt: silt content of the topsoil [%] - PercentOC: organic carbon in the topsoil [%] - ErosK: mean detachability of the soil (Morgan et al., 1998) [g/J] - USLE_K: soil erodibility factor from the USLE equation [-] -:param ds: Dataset containing soil properties. -:type ds: xarray.Dataset -:param ds_like: Dataset at model resolution. -:type ds_like: xarray.DataArray -:param usleK_method: Method to use for calculation of USLE_K {“renard”, “epic”}. -:type usleK_method: str
+The following soil parameter maps are calculated:
++
- +
PercentClay: clay content of the topsoil [%]
- +
PercentSilt: silt content of the topsoil [%]
- +
PercentOC: organic carbon in the topsoil [%]
- +
ErosK: mean detachability of the soil (Morgan et al., 1998) [g/J]
- +
USLE_K: soil erodibility factor from the USLE equation [-]
-
- Returns:
-ds_out – Dataset containing gridded soil parameters for sediment modelling.
+- Parameters:
+- +
+
+- +
ds (xarray.Dataset) – Dataset containing soil properties.
- +
ds_like (xarray.DataArray) – Dataset at model resolution.
- +
usleK_method (str) – Method to use for calculation of USLE_K {“renard”, “epic”}.
- Returns:
+- -
ds_out – Dataset containing gridded soil parameters for sediment modelling.
- Return type:
-- +
- Return type:
+hydromt_wflow.workflows.topographyhydromt_wflow.workflows.topography(ds: ~xarray.core.dataset.Dataset, ds_like: ~xarray.core.dataset.Dataset, elevtn_name: str = 'elevtn', lndslp_name: str = 'lndslp', method: str = 'average', logger=<Logger hydromt_wflow.workflows.basemaps (WARNING)>)[source]#
Returns topography maps (see list below) at model resolution based on gridded elevation data input.
-The following topography maps are calculated: - elevtn : average elevation [m] - lndslp : average land surface slope [m/m] -:param ds: Dataset containing gridded flow direction and elevation data. -:type ds: xarray.DataArray -:param ds_like: Dataset at model resolution. -:type ds_like: xarray.DataArray -:param elevtn_name: Name of elevation [m] and land surface slope [m/m] variables in ds -:type elevtn_name: str, optional -:param lndslp_name: Name of elevation [m] and land surface slope [m/m] variables in ds -:type lndslp_name: str, optional -:param method: Resample method used to reproject the input data, by default “average” -:type method: str, optional
+The following topography maps are calculated:
++
- +
elevtn : average elevation [m]
- +
lndslp : average land surface slope [m/m]
-
- Returns:
-+
- Parameters:
+- +
+
+- +
ds (xarray.DataArray) – Dataset containing gridded flow direction and elevation data.
- +
ds_like (xarray.DataArray) – Dataset at model resolution.
- +
elevtn_name (str, optional) – Name of elevation [m] and land surface slope [m/m] variables in ds
- +
lndslp_name (str, optional) – Name of elevation [m] and land surface slope [m/m] variables in ds
- +
method (str, optional) – Resample method used to reproject the input data, by default “average”
- Returns:
+diff --git a/dev/_generated/hydromt_wflow.workflows.waterbodymaps.html b/dev/_generated/hydromt_wflow.workflows.waterbodymaps.html index c845f25c..7f0c065d 100644 --- a/dev/_generated/hydromt_wflow.workflows.waterbodymaps.html +++ b/dev/_generated/hydromt_wflow.workflows.waterbodymaps.html @@ -587,7 +587,11 @@
ds_out (xarray.DataArray) – Dataset containing gridded hydrography data
flwdir_out (pyflwdir.FlwdirRaster) – Flow direction raster object.
hydromt_wflow.workflows.waterbodymapshydromt_wflow.workflows.waterbodymaps(gdf, ds_like, wb_type='reservoir', uparea_name='uparea', logger=<Logger hydromt_wflow.workflows.waterbodies (WARNING)>)[source]#
Returns waterbody (reservoir/lake) maps (see list below) at model resolution based on gridded upstream area data input or outlet coordinates.
-The following waterbody maps are calculated: - resareas/lakeareas : waterbody areas mask [ID] - reslocs/lakelocs : waterbody outlets [ID]
+The following waterbody maps are calculated:
++
- +
resareas/lakeareas : waterbody areas mask [ID]
- +
reslocs/lakelocs : waterbody outlets [ID]
- Parameters:
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Source code for hydromt_wflow.wflow
This component sets the all river parameter maps. The river mask is defined by all cells with a mimimum upstream area threshold - `river_upa` [km2]. + ``river_upa`` [km2]. The river length is defined as the distance from the subgrid outlet pixel to - the next upstream subgrid outlet pixel. The `min_rivlen_ratio` is the minimum + the next upstream subgrid outlet pixel. The ``min_rivlen_ratio`` is the minimum global river length to avg. cell resolution ratio and is used as a threshold in window based smoothing of river length. The river slope is derived from the subgrid elevation difference between pixels at a - half distance `slope_len` [m] up- and downstream from the subgrid outlet pixel. + half distance ``slope_len`` [m] up- and downstream from the subgrid outlet pixel. The river manning roughness coefficient is derived based on reclassification - of the streamorder map using a lookup table `rivman_mapping_fn`. + of the streamorder map using a lookup table ``rivman_mapping_fn``. - The river width is derived from the nearest river segment in `river_geom_fn`. + The river width is derived from the nearest river segment in ``river_geom_fn``. Data gaps are filled by the nearest valid upstream value and averaged along - the flow directions over a length `smooth_len` [m] + the flow directions over a length ``smooth_len`` [m] - The river depth is calculated using the `rivdph_method`, by default powlaw: + The river depth is calculated using the ``rivdph_method``, by default powlaw: h = hc*Qbf**hp, which is based on qbankfull discharge from the nearest river - segment in `river_geom_fn` and takes optional arguments for the hc + segment in ``river_geom_fn`` and takes optional arguments for the hc (default = 0.27) and hp (default = 0.30) parameters. For other methods see :py:meth:`hydromt.workflows.river_depth`. - If `river_routing` is set to "local-inertial", the bankfull elevantion map can be + If ``river_routing`` is set to "local-inertial", the bankfull elevantion map can be conditioned based on the average cell elevation ("wflow_dem") or subgrid outlet pixel elevation ("dem_subgrid"). The subgrid elevation might provide a better representation of the river elevation profile, however in combination with local-inertial land routing - (see `hydromt.setup_floodplains`) the subgrid elevation will likely overestimate the + (see :py:meth:`setup_floodplains`) the subgrid elevation will likely overestimate the floodplain storage capacity. Note that the same input elevation map should be used for river bankfull elevation and land elevation when using local-inertial land routing. @@ -749,7 +749,7 @@Source code for hydromt_wflow.wflow
workflows.river_bathymetry hydromt.workflows.river_depth pyflwdir.FlwdirRaster.river_depth - hydromt.setup_floodplains + setup_floodplains """ self.logger.info(f"Preparing river maps.") @@ -878,17 +878,17 @@Source code for hydromt_wflow.wflow
): """ This components adds floodplain information to the model schematistation. The user can - define what type of floodplains are required (1D or 2D), through the `floodplain_type` + define what type of floodplains are required (1D or 2D), through the ``floodplain_type`` argument. - If `floodplain_type` is set to "1d", a floodplain profile is derived for every river + If ``floodplain_type`` is set to "1d", a floodplain profile is derived for every river cell. It adds a map with floodplain volume per flood depth, which is used in the wflow 1D floodplain schematisation. - Note, it is important to use the same river uparea value as used in the `setup_rivers` + Note, it is important to use the same river uparea value as used in the :py:meth:`setup_rivers` method. - If `floodplain_type` is set to "2d", this component adds a hydrologically conditioned + If ``floodplain_type`` is set to "2d", this component adds a hydrologically conditioned elevation (hydrodem) map for land routing (local-inertial). For this options, landcells need to be conditioned to D4 flow directions otherwise pits may remain in the land cells. @@ -900,13 +900,13 @@Source code for hydromt_wflow.wflow
Additionally, note that the same input elevation map should be used for river bankfull elevation and land elevation when using local-inertial land routing. - Requires `setup_rivers` to be executed beforehand (with `river_routing` set to - `local-inertial`). + Requires :py:meth:`setup_rivers` to be executed beforehand (with ``river_routing`` set to + "local-inertial"). Adds model layers: * **floodplain_volume** map: map with floodplain volumes, has flood depth as third - dimension [m3] (for 1D floodplains) + dimension [m3] (for 1D floodplains) * **hydrodem** map: hydrologically conditioned elevation [m+REF] (for 2D floodplains) Parameters @@ -933,10 +933,10 @@Source code for hydromt_wflow.wflow
See Also -------- - hydromt.workflows.river_floodplain_volume + workflows.river_floodplain_volume hydromt.flw.dem_adjust pyflwdir.FlwdirRaster.dem_adjust - hydromt.setup_rivers + setup_rivers """ if self.get_config("model.river_routing") != "local-inertial": raise ValueError( @@ -1179,7 +1179,7 @@Source code for hydromt_wflow.wflow
landcover (LULC) data. Currently, ``lulc_fn`` can be set to the "vito", "globcover", "esa_worldcover" - or "corine", fo which lookup tables are constructed to convert lulc classses to + or "corine", of which lookup tables are constructed to convert lulc classses to model parameters based on literature. The data is remapped at its original resolution and then resampled to the model resolution using the average value, unless noted differently. @@ -1437,7 +1437,7 @@Source code for hydromt_wflow.wflow
used to set the maximum distance to snap to the mask. * snapping based on upstream area matching: : ``snap_uparea=True``. The gauge locations are snapped to the closest matching upstream area value. Requires gauges_fn to have - an `uparea` [km2] column. The closest value will be looked for in a cell window of size ``wdw`` + an ``uparea`` [km2] column. The closest value will be looked for in a cell window of size ``wdw`` and the difference between the gauge and the closest value should be smaller than ``rel_error``. If ``derive_subcatch`` is set to True, an additional subcatch map is derived from @@ -1638,8 +1638,11 @@Source code for hydromt_wflow.wflow
nodata: Union[int, float] = -1, ): """Setup area map from vector data to save wflow outputs for specific area. + Adds model layer: + * **col2raster** map: output area data map + Parameters ---------- area_fn : str @@ -2190,6 +2193,7 @@Source code for hydromt_wflow.wflow
The config toml can also be updated to include the new maps using ``wflow_variables``. Adds model layers: + * **raster.name** or **variables** staticmaps: data from raster_fn Parameters @@ -2946,9 +2950,9 @@Source code for hydromt_wflow.wflow
time_units="days since 1900-01-01T00:00:00", **kwargs, ): - """write forcing at `fn_out` in model ready format. + """write forcing at ``fn_out`` in model ready format. - If no `fn_out` path is provided and path_forcing from the wflow toml exists, + If no ``fn_out`` path is provided and path_forcing from the wflow toml exists, the following default filenames are used: * Default name format (with downscaling): inmaps_sourcePd_sourceTd_methodPET_freq_startyear_endyear.nc diff --git a/dev/_modules/hydromt_wflow/wflow_sediment.html b/dev/_modules/hydromt_wflow/wflow_sediment.html index 808e7cfd..b7769f71 100644 --- a/dev/_modules/hydromt_wflow/wflow_sediment.html +++ b/dev/_modules/hydromt_wflow/wflow_sediment.html @@ -463,7 +463,7 @@Source code for hydromt_wflow.wflow_sediment
See Also -------- - hydromt.WflowModel.setup_rivers + WflowModel.setup_rivers """ super().setup_rivers(*args, **kwargs) @@ -597,23 +597,23 @@Source code for hydromt_wflow.wflow_sediment
): """This components sets the default gauge map based on basin outlets. - Adds model layers: + Adds model layers: - * **wflow_gauges** map: gauge IDs map from catchment outlets [-] - * **gauges** geom: polygon of catchment outlets + * **wflow_gauges** map: gauge IDs map from catchment outlets [-] + * **gauges** geom: polygon of catchment outlets - Parameters - ---------- - river_only : bool, optional - Only derive outlet locations if they are located on a river instead of locations for all catchments, by default True. + Parameters + ---------- + river_only : bool, optional + Only derive outlet locations if they are located on a river instead of locations for all catchments, by default True. toml_output : str, optional - One of ['csv', 'netcdf', None] to update [csv] or [netcdf] section of wflow toml file or do nothing. By default, 'csv'. - gauge_toml_header : list, optional - Save specific model parameters in csv section. This option defines the header of the csv file./ - By default saves TSS (for lateral.river.SSconc). - gauge_toml_param: list, optional - Save specific model parameters in csv section. This option defines the wflow variable corresponding to the/ - names in gauge_toml_header. By default saves lateral.river.SSconc (for TSS). + One of ['csv', 'netcdf', None] to update [csv] or [netcdf] section of wflow toml file or do nothing. By default, 'csv'. + gauge_toml_header : list, optional + Save specific model parameters in csv section. This option defines the header of the csv file./ + By default saves TSS (for lateral.river.SSconc). + gauge_toml_param: list, optional + Save specific model parameters in csv section. This option defines the wflow variable corresponding to the/ + names in gauge_toml_header. By default saves lateral.river.SSconc (for TSS). """ super().setup_outlets( river_only=river_only, diff --git a/dev/_modules/hydromt_wflow/workflows/basemaps.html b/dev/_modules/hydromt_wflow/workflows/basemaps.html index 9ae02b91..fc1bcd62 100644 --- a/dev/_modules/hydromt_wflow/workflows/basemaps.html +++ b/dev/_modules/hydromt_wflow/workflows/basemaps.html @@ -665,13 +665,14 @@Source code for hydromt_wflow.workflows.basemaps
method: str = "average", logger=logger, ): - """Returns topography maps (see list below) at model resolution based on gridded - elevation data input. + """Returns topography maps (see list below) at model resolution based on gridded + elevation data input. + + The following topography maps are calculated: + + - elevtn : average elevation [m] + - lndslp : average land surface slope [m/m] - The following topography maps are calculated:\ - - elevtn : average elevation [m]\ - - lndslp : average land surface slope [m/m]\ - Parameters ---------- ds : xarray.DataArray diff --git a/dev/_modules/hydromt_wflow/workflows/glaciers.html b/dev/_modules/hydromt_wflow/workflows/glaciers.html index a956c945..234440b4 100644 --- a/dev/_modules/hydromt_wflow/workflows/glaciers.html +++ b/dev/_modules/hydromt_wflow/workflows/glaciers.html @@ -426,11 +426,12 @@Source code for hydromt_wflow.workflows.glaciers
): """Returns glacier maps (see list below) at model resolution. - The following glacier maps are calculated:\ - - wflow_glacierareas: glacier IDs [ID]\ - - wflow_glacierfrac: area fraction of glacier per cell [-]\ - - wflow_glacierstore: storage (volume) of glacier per cell [mm]\ - + The following glacier maps are calculated: + + - wflow_glacierareas: glacier IDs [ID] + - wflow_glacierfrac: area fraction of glacier per cell [-] + - wflow_glacierstore: storage (volume) of glacier per cell [mm] + Parameters ---------- gdf : geopandas.GeoDataFrame @@ -548,10 +549,11 @@Source code for hydromt_wflow.workflows.glaciers
): """Returns glacier intbls (see list below). - The following glacier intbls are calculated:\ - - glacTempThresh: glacier temperature threshold [°C]\ - - glacCfmax: glacier melting factor [mm/(°C*day)]\ - - glacSIfrac: fraction of snowpack converted into ice and added to glacier storage [-]\ + The following glacier intbls are calculated: + + - glacTempThresh: glacier temperature threshold [°C] + - glacCfmax: glacier melting factor [mm/(°C*day)] + - glacSIfrac: fraction of snowpack converted into ice and added to glacier storage [-] Parameters ---------- diff --git a/dev/_modules/hydromt_wflow/workflows/landuse.html b/dev/_modules/hydromt_wflow/workflows/landuse.html index 2008944d..91805d0d 100644 --- a/dev/_modules/hydromt_wflow/workflows/landuse.html +++ b/dev/_modules/hydromt_wflow/workflows/landuse.html @@ -428,7 +428,8 @@Source code for hydromt_wflow.workflows.landuse
< The parameter maps are prepared based on landuse map and mapping table as provided in the generic data folder of hydromt. - The following topography maps are calculated:\ + The following topography maps are calculated: + - TODO Parameters diff --git a/dev/_modules/hydromt_wflow/workflows/river.html b/dev/_modules/hydromt_wflow/workflows/river.html index 94f975b2..b9815220 100644 --- a/dev/_modules/hydromt_wflow/workflows/river.html +++ b/dev/_modules/hydromt_wflow/workflows/river.html @@ -442,10 +442,11 @@Source code for hydromt_wflow.workflows.river
): """Returns river maps - The output maps are:\ - - rivmsk : river mask based on upstream area threshold on upstream area\ - - rivlen : river length [m]\ - - rivslp : smoothed river slope [m/m]\ + The output maps are: + + - rivmsk : river mask based on upstream area threshold on upstream area + - rivlen : river length [m] + - rivslp : smoothed river slope [m/m] - rivzs : elevation of the river bankfull height based on pixel outlet - rivwth : river width at pixel outlet (if in ds) - qbankfull : bankfull discharge at pixel outlet (if in ds) diff --git a/dev/_modules/hydromt_wflow/workflows/soilgrids.html b/dev/_modules/hydromt_wflow/workflows/soilgrids.html index db8fb3e7..8e5afe88 100644 --- a/dev/_modules/hydromt_wflow/workflows/soilgrids.html +++ b/dev/_modules/hydromt_wflow/workflows/soilgrids.html @@ -689,37 +689,38 @@ Source code for hydromt_wflow.workflows.soilgrids
[docs]def soilgrids(ds, ds_like, ptfKsatVer, soil_fn, logger=logger): """ Returns soil parameter maps at model resolution based on soil properties from SoilGrids datasets. - Both soilgrids 2017 and 2020 are supported. Soilgrids 2017 provides soil properties at 7 specific depths, while soilgrids_2020 provides soil properties averaged over 6 depth intervals. - Ref: Hengl, T., Mendes de Jesus, J., Heuvelink, G. B. M., Ruiperez Gonzalez, M., Kilibarda, - M., Blagotic, A., et al.: SoilGrids250m: Global gridded soil information based on machine learning, + Both soilgrids 2017 and 2020 are supported. Soilgrids 2017 provides soil properties at 7 specific depths, while soilgrids_2020 provides soil properties averaged over 6 depth intervals. + Ref: Hengl, T., Mendes de Jesus, J., Heuvelink, G. B. M., Ruiperez Gonzalez, M., Kilibarda, + M., Blagotic, A., et al.: SoilGrids250m: Global gridded soil information based on machine learning, PLoS ONE, 12, https://doi.org/10.1371/journal.pone.0169748, 2017. - Ref: de Sousa, L.M., Poggio, L., Batjes, N.H., Heuvelink, G., Kempen, B., Riberio, E. and Rossiter, D., 2020. + Ref: de Sousa, L.M., Poggio, L., Batjes, N.H., Heuvelink, G., Kempen, B., Riberio, E. and Rossiter, D., 2020. SoilGrids 2.0: producing quality-assessed soil information for the globe. SOIL Discussions, pp.1-37. - https://doi.org/10.5194/soil-2020-65 - - The following soil parameter maps are calculated:\ - - `thetaS` : average saturated soil water content [m3/m3]\ - - `thetaR` : average residual water content [m3/m3]\ - - `KsatVer` : vertical saturated hydraulic conductivity at soil surface [mm/day]\ - - `SoilThickness` : soil thickness [mm]\ - - `SoilMinThickness` : minimum soil thickness [mm] (equal to SoilThickness)\ - - `M` : model parameter [mm] that controls exponential decline of KsatVer with soil depth - (fitted with curve_fit (scipy.optimize)), bounds of M are checked\ - - `M_` : model parameter [mm] that controls exponential decline of KsatVer with soil depth - (fitted with numpy linalg regression), bounds of `M_`are checked\ - - `M_original` : `M` without checking bounds\ - - `M_original_` : `M_`without checking bounds\ - - `f` : scaling parameter controlling the decline of KsatVer [mm-1] (fitted with curve_fit (scipy.optimize)), bounds are checked\ - - `f_` : scaling parameter controlling the decline of KsatVer [mm-1] (fitted with numpy linalg regression), bounds are checked\ - - `c_0` : Brooks Corey coefficient [-] based on pore size distribution index at depth - 1st soil layer (100 mm) wflow_sbm\ - - `c_1` : idem `c_0` at depth 2nd soil layer (400 mm) wflow_sbm\ - - `c_2` : idem `c_0` at depth 3rd soil layer (1200 mm) wflow_sbm\ - - `c_3` : idem `c_0` at depth 4th soil layer (> 1200 mm) wflow_sbm\ - - `KsatVer_[z]cm` : KsatVer [mm/day] at soil depths [z] of SoilGrids data [0.0, 5.0, 15.0, 30.0, 60.0, 100.0, 200.0]\ - - `wflow_soil` : USDA Soil texture based on percentage clay, silt, sand mapping: [1:Clay, 2:Silty Clay, 3:Silty Clay-Loam, 4:Sandy Clay, 5:Sandy Clay-Loam, 6:Clay-Loam, 7:Silt, 8:Silt-Loam, 9:Loam, 10:Sand, 11: Loamy Sand, 12:Sandy Loam]\ - - + https://doi.org/10.5194/soil-2020-65 + + The following soil parameter maps are calculated: + + - **thetaS** : average saturated soil water content [m3/m3] + - **thetaR** : average residual water content [m3/m3] + - **KsatVer** : vertical saturated hydraulic conductivity at soil surface [mm/day] + - **SoilThickness** : soil thickness [mm] + - **SoilMinThickness** : minimum soil thickness [mm] (equal to SoilThickness) + - **M** : model parameter [mm] that controls exponential decline of KsatVer with soil depth + (fitted with curve_fit (scipy.optimize)), bounds of **M** are checked + - **M\_** : model parameter [mm] that controls exponential decline of KsatVer with soil depth + (fitted with numpy linalg regression), bounds of **M_** are checked + - **M_original** : **M** without checking bounds + - **M_original_** : **M_** without checking bounds + - **f** : scaling parameter controlling the decline of KsatVer [mm-1] (fitted with curve_fit (scipy.optimize)), bounds are checked + - **f_** : scaling parameter controlling the decline of KsatVer [mm-1] (fitted with numpy linalg regression), bounds are checked + - **c_0** : Brooks Corey coefficient [-] based on pore size distribution index at depth 1st + soil layer (100 mm) wflow_sbm + - **c_1** : idem **c_0** at depth 2nd soil layer (400 mm) wflow_sbm + - **c_2** : idem **c_0** at depth 3rd soil layer (1200 mm) wflow_sbm + - **c_3** : idem **c_0** at depth 4th soil layer (> 1200 mm) wflow_sbm + - **KsatVer_[z]cm** : KsatVer [mm/day] at soil depths [z] of SoilGrids data [0.0, 5.0, 15.0, 30.0, 60.0, 100.0, 200.0] + - **wflow_soil** : USDA Soil texture based on percentage clay, silt, sand mapping: [1:Clay, 2:Silty Clay, 3:Silty Clay-Loam, 4:Sandy Clay, 5:Sandy Clay-Loam, 6:Clay-Loam, 7:Silt, 8:Silt-Loam, 9:Loam, 10:Sand, 11: Loamy Sand, 12:Sandy Loam] + + Parameters ---------- ds : xarray.Dataset @@ -954,16 +955,17 @@Source code for hydromt_wflow.workflows.soilgrids
[docs]def soilgrids_sediment(ds, ds_like, usleK_method, logger=logger): """ - Returns soil parameter maps for sediment modelling at model resolution based on soil + Returns soil parameter maps for sediment modelling at model resolution based on soil properties from SoilGrids dataset. - The following soil parameter maps are calculated:\ - - PercentClay: clay content of the topsoil [%]\ - - PercentSilt: silt content of the topsoil [%]\ - - PercentOC: organic carbon in the topsoil [%]\ - - ErosK: mean detachability of the soil (Morgan et al., 1998) [g/J]\ - - USLE_K: soil erodibility factor from the USLE equation [-]\ - + The following soil parameter maps are calculated: + + * PercentClay: clay content of the topsoil [%] + * PercentSilt: silt content of the topsoil [%] + * PercentOC: organic carbon in the topsoil [%] + * ErosK: mean detachability of the soil (Morgan et al., 1998) [g/J] + * USLE_K: soil erodibility factor from the USLE equation [-] + Parameters ---------- ds : xarray.Dataset diff --git a/dev/_modules/hydromt_wflow/workflows/waterbodies.html b/dev/_modules/hydromt_wflow/workflows/waterbodies.html index bfd9f7cd..0939a84a 100644 --- a/dev/_modules/hydromt_wflow/workflows/waterbodies.html +++ b/dev/_modules/hydromt_wflow/workflows/waterbodies.html @@ -427,13 +427,14 @@Source code for hydromt_wflow.workflows.waterbodies
uparea_name="uparea", logger=logger, ): - """Returns waterbody (reservoir/lake) maps (see list below) at model resolution based on gridded - upstream area data input or outlet coordinates. + """Returns waterbody (reservoir/lake) maps (see list below) at model resolution based on gridded + upstream area data input or outlet coordinates. - The following waterbody maps are calculated:\ - - resareas/lakeareas : waterbody areas mask [ID]\ + The following waterbody maps are calculated: + + - resareas/lakeareas : waterbody areas mask [ID] - reslocs/lakelocs : waterbody outlets [ID] - + Parameters ---------- gdf : geopandas.GeoDataFrame @@ -441,7 +442,7 @@Source code for hydromt_wflow.workflows.waterbodies
ds_like : xarray.DataArray Dataset at model resolution. uparea_name : str, optional - Name of uparea variable in ds_like. If None then database coordinates will be + Name of uparea variable in ds_like. If None then database coordinates will be used to setup outlets wb_type : str, optional either "reservoir" or "lake" Option to change the name of the maps depending on reservoir or lake @@ -526,29 +527,30 @@Source code for hydromt_wflow.workflows.waterbodies
[docs]def reservoirattrs(gdf, timeseries_fn=None, perc_norm=50, perc_min=20, logger=logger): - """Returns reservoir attributes (see list below) needed for modelling. - When specified, some of the reservoir attributes can be derived from earth observation data. + """Returns reservoir attributes (see list below) needed for modelling. + When specified, some of the reservoir attributes can be derived from earth observation data. Two options are currently available: 1. Global Water Watch data (Deltares, 2022) using gwwapi and 2. JRC (Peker, 2016) using hydroengine. - The following reservoir attributes are calculated:\ - - resmaxvolume : reservoir maximum volume [m3]\ - - resarea : reservoir area [m2]\ - - resdemand : reservoir demand flow [m3/s]\ - - resmaxrelease : reservoir maximum release flow [m3/s]\ - - resfullfrac : reservoir targeted full volume fraction [m3/m3]\ - - resminfrac : reservoir targeted minimum volume fraction [m3/m3]\ - + The following reservoir attributes are calculated: + + - resmaxvolume : reservoir maximum volume [m3] + - resarea : reservoir area [m2] + - resdemand : reservoir demand flow [m3/s] + - resmaxrelease : reservoir maximum release flow [m3/s] + - resfullfrac : reservoir targeted full volume fraction [m3/m3] + - resminfrac : reservoir targeted minimum volume fraction [m3/m3] + Parameters ---------- gdf : geopandas.GeoDataFrame GeoDataFrame containing reservoirs geometries and attributes. - timeseries_fn : str, optional + timeseries_fn : str, optional Name of database from which time series of reservoir surface water area will be retrieved. Currently available: ['jrc', 'gww'] - Defaults to Deltares' Global Water Watch database. + Defaults to Deltares' Global Water Watch database. perc_norm : int, optional Percentile for normal (operational) surface area - perc_min: int, optional + perc_min: int, optional Percentile for minimal (operational) surface area Returns @@ -558,7 +560,7 @@Source code for hydromt_wflow.workflows.waterbodies
df_plot : pandas.DataFrame DataFrame containing debugging values for reservoir building. df_ts : pandas.DataFrame - DataFrame containing all downloaded reservoir time series. + DataFrame containing all downloaded reservoir time series. """ if timeseries_fn == "jrc": @@ -897,22 +899,23 @@Source code for hydromt_wflow.workflows.waterbodies
logger=logger, ): """ - Returns lake attributes (see list below) needed for modelling. + Returns lake attributes (see list below) needed for modelling. If rating_dict is not empty, prepares also rating tables for wflow - The following reservoir attributes are calculated:\ - - waterbody_id : waterbody id\ - - LakeArea : lake area [m2]\ - - LakeAvgLevel: lake average level [m]\ - - LakeAvgOut: lake average outflow [m3/s]\ - - Lake_b: lake rating curve coefficient [-]\ - - Lake_e: lake rating curve exponent [-]\ - - LakeStorFunc: option to compute storage curve [-]\ - - LakeOutflowFunc: option to compute rating curve [-]\ - - LakeThreshold: minimium threshold for lake outflow [m]\ - - LinkedLakeLocs: id of linked lake location if any\ + The following reservoir attributes are calculated: + + - waterbody_id : waterbody id + - LakeArea : lake area [m2] + - LakeAvgLevel: lake average level [m] + - LakeAvgOut: lake average outflow [m3/s] + - Lake_b: lake rating curve coefficient [-] + - Lake_e: lake rating curve exponent [-] + - LakeStorFunc: option to compute storage curve [-] + - LakeOutflowFunc: option to compute rating curve [-] + - LakeThreshold: minimium threshold for lake outflow [m] + - LinkedLakeLocs: id of linked lake location if any - LakeMaxStorage: maximum storage [m3] (optional) - + Parameters ---------- ds : xr.Dataset @@ -923,7 +926,7 @@Source code for hydromt_wflow.workflows.waterbodies
Dictionary containing the rating curve parameters, by default dict() add_maxstorage : bool, optional If True, adds the maximum storage to the output, by default False - + Returns ------- ds : xr.Dataset diff --git a/dev/api.html b/dev/api.html index f5c89dd8..acb93122 100644 --- a/dev/api.html +++ b/dev/api.html @@ -779,7 +779,7 @@General methods
-
WflowModel.write_forcing
([fn_out, freq_out, ...])+ write forcing at fn_out in model ready format.
write forcing at
fn_out
in model ready format.
WflowModel.clip_forcing
([crs])
Return clippped forcing for subbasin.
WflowSedimentModel.write_forcing
([fn_out, ...])
write forcing at fn_out in model ready format.
write forcing at fn_out
in model ready format.
Return clippped forcing for subbasin.
Method |
+Explanation |
+
---|---|
+ | Update config with a dictionary |
+
+ | This component sets the region of interest and res (resolution in degrees) of the model. |
+
+ | This component sets the all river parameter maps. |
+
+ | This component This components adds floodplain information to the model schematization (can be either 1D or 2D). |
+
+ | This component generates maps of lake areas and outlets as well as parameters with average lake area, depth a discharge values. |
+
+ | This component generates maps of reservoir areas and outlets as well as parameters with average reservoir area, demand, min and max target storage capacities and discharge capacity values. |
+
+ | This component generates maps of glacier areas, area fraction and volume fraction, as well as tables with temperature threshold, melting factor and snow-to-ice convertion fraction. |
+
+ | This component derives several wflow maps are derived based on landuse- landcover (LULC) data. |
+
+ | This component sets leaf area index (LAI) climatology maps per month. |
+
+ | This component derives several (layered) soil parameters based on a database with physical soil properties using available point-scale (pedo)transfer functions (PTFs) from literature with upscaling rulesto ensure flux matching across scales. |
+
+ | This component derives an estimate of the rooting depth from hydroclimatic data (as an alternative from the look-up table). The method can be applied for current conditions and future climate change conditions. |
+
+ | This method sets the default gauge map based on basin outlets. |
+
+ | This method sets the default gauge map based on a gauges_fn data. |
+
+ | Setup area map from vector data to save wflow outputs for specific area. |
+
+ | This method add new variable/column to the netcf/csv output section of the toml based on a selected gauge/area map. |
+
+ | Setup gridded precipitation forcing at model resolution. |
+
+ | Setup gridded reference evapotranspiration forcing at model resolution. |
+
+ | Setup constant parameter maps for all active model cells. |
+
+ | Setup staticmaps from raster to add parameters from direct data. |
+