diff --git a/topics/ecology/metadata.yaml b/topics/ecology/metadata.yaml index 62287a885c1614..385abc1ed5c62b 100644 --- a/topics/ecology/metadata.yaml +++ b/topics/ecology/metadata.yaml @@ -12,6 +12,23 @@ requirements: type: "internal" topic_name: introduction +subtopics: + - id: ecologymetadatamgt + title: "Data and Metadata Management" + description: "These tutorials are focusing on data and metadata management in Ecology." + - id: ecologyaccess + title: "Data access" + description: "These lessons focus on ways to access data classicaly used in Ecology" + - id: ecologypreprocess + title: "Data preprocessing" + description: "These lessons focus on manners to preprocess data used in Ecology" + - id: ecologyanalysis + title: "Data analysis" + description: "These lessons focus on ways to analyse data in Ecology" + - id: ecologyviz + title: "Data visualization" + description: "These tutorials showcase data visualization in Ecology" + editorial_board: - yvanlebras diff --git a/topics/ecology/tutorials/MetaShARK_tutorial/tutorial.md b/topics/ecology/tutorials/MetaShARK_tutorial/tutorial.md index 5ee1b7b002c620..da8dd038d6c3f4 100644 --- a/topics/ecology/tutorials/MetaShARK_tutorial/tutorial.md +++ b/topics/ecology/tutorials/MetaShARK_tutorial/tutorial.md @@ -37,6 +37,7 @@ contributions: - fnso2019 - pndb +subtopic: ecologymetadatamgt --- diff --git a/topics/ecology/tutorials/Metashrimps_tutorial/tutorial.md b/topics/ecology/tutorials/Metashrimps_tutorial/tutorial.md index bba468fa630f35..ae49d6024dc5b1 100644 --- a/topics/ecology/tutorials/Metashrimps_tutorial/tutorial.md +++ b/topics/ecology/tutorials/Metashrimps_tutorial/tutorial.md @@ -35,6 +35,7 @@ contributions: - fnso2019 - pndb +subtopic: ecologymetadatamgt --- diff --git a/topics/ecology/tutorials/Obitools-metabarcoding/tutorial.md b/topics/ecology/tutorials/Obitools-metabarcoding/tutorial.md index b3bca0b6d33433..378c7abd63344c 100644 --- a/topics/ecology/tutorials/Obitools-metabarcoding/tutorial.md +++ b/topics/ecology/tutorials/Obitools-metabarcoding/tutorial.md @@ -40,6 +40,7 @@ recordings: speakers: - yvanlebras +subtopic: ecologyanalysis --- diff --git a/topics/ecology/tutorials/PAMPA-toolsuite-tutorial/tutorial.md b/topics/ecology/tutorials/PAMPA-toolsuite-tutorial/tutorial.md index d2c37c7bd0f8fd..0f53fb0e6253c6 100644 --- a/topics/ecology/tutorials/PAMPA-toolsuite-tutorial/tutorial.md +++ b/topics/ecology/tutorials/PAMPA-toolsuite-tutorial/tutorial.md @@ -38,7 +38,6 @@ contributions: - gallantries - pndb - recordings: - captioners: - colineroyaux @@ -49,6 +48,7 @@ recordings: speakers: - colineroyaux +subtopic: ecologyanalysis --- diff --git a/topics/ecology/tutorials/QGIS_Web_Feature_Services/tutorial.md b/topics/ecology/tutorials/QGIS_Web_Feature_Services/tutorial.md index 594af133d82568..d984929e5bedfb 100644 --- a/topics/ecology/tutorials/QGIS_Web_Feature_Services/tutorial.md +++ b/topics/ecology/tutorials/QGIS_Web_Feature_Services/tutorial.md @@ -27,6 +27,7 @@ contributions: - fairease - pndb +subtopic: ecologyaccess --- diff --git a/topics/ecology/tutorials/bacterial-isolate-species-contamination-checking/tutorial.md b/topics/ecology/tutorials/bacterial-isolate-species-contamination-checking/tutorial.md index bc2e7ad14dd795..841fe1972548c9 100644 --- a/topics/ecology/tutorials/bacterial-isolate-species-contamination-checking/tutorial.md +++ b/topics/ecology/tutorials/bacterial-isolate-species-contamination-checking/tutorial.md @@ -30,6 +30,8 @@ contributions: - clsiguret funding: - abromics + +subtopic: ecologypreprocess --- Sequencing (determining of DNA/RNA nucleotide sequence) is used all over the world for all kinds of analysis. The product of these sequencers are reads, which are sequences of detected nucleotides. diff --git a/topics/ecology/tutorials/biodiversity-data-exploration/tutorial.md b/topics/ecology/tutorials/biodiversity-data-exploration/tutorial.md index b9e7e437fa9349..52355350c21316 100644 --- a/topics/ecology/tutorials/biodiversity-data-exploration/tutorial.md +++ b/topics/ecology/tutorials/biodiversity-data-exploration/tutorial.md @@ -39,6 +39,7 @@ recordings: speakers: - onorvez +subtopic: ecologypreprocess --- diff --git a/topics/ecology/tutorials/champs-blocs/tutorial.md b/topics/ecology/tutorials/champs-blocs/tutorial.md index c97536b1d518e7..84c7fe2fab232c 100644 --- a/topics/ecology/tutorials/champs-blocs/tutorial.md +++ b/topics/ecology/tutorials/champs-blocs/tutorial.md @@ -22,6 +22,8 @@ contributions: - pndb translations: - fr + +subtopic: ecologyanalysis --- diff --git a/topics/ecology/tutorials/de-novo-rad-seq/tutorial.md b/topics/ecology/tutorials/de-novo-rad-seq/tutorial.md index c593107788f330..64e0b756616705 100644 --- a/topics/ecology/tutorials/de-novo-rad-seq/tutorial.md +++ b/topics/ecology/tutorials/de-novo-rad-seq/tutorial.md @@ -21,6 +21,8 @@ tags: - EBV workflow contributors: - yvanlebras + +subtopic: ecologyanalysis --- diff --git a/topics/ecology/tutorials/gbif_cleaning/tutorial.md b/topics/ecology/tutorials/gbif_cleaning/tutorial.md index cb755e709004c4..40f68e33f9510f 100644 --- a/topics/ecology/tutorials/gbif_cleaning/tutorial.md +++ b/topics/ecology/tutorials/gbif_cleaning/tutorial.md @@ -26,6 +26,7 @@ contributions: funding: - pndb +subtopic: ecologypreprocess --- diff --git a/topics/ecology/tutorials/genetic-map-rad-seq/tutorial.md b/topics/ecology/tutorials/genetic-map-rad-seq/tutorial.md index 28f682980f3197..a39b51e806948b 100644 --- a/topics/ecology/tutorials/genetic-map-rad-seq/tutorial.md +++ b/topics/ecology/tutorials/genetic-map-rad-seq/tutorial.md @@ -20,6 +20,8 @@ time_estimation: "8h" key_points: contributors: - yvanlebras + +subtopic: ecologyanalysis --- diff --git a/topics/ecology/tutorials/ndvi_openeo/tutorial.md b/topics/ecology/tutorials/ndvi_openeo/tutorial.md index e8a3e59cbd61c0..03d5b5728036a4 100644 --- a/topics/ecology/tutorials/ndvi_openeo/tutorial.md +++ b/topics/ecology/tutorials/ndvi_openeo/tutorial.md @@ -26,6 +26,8 @@ contributions: funding: - fairease - eurosciencegateway + +subtopic: ecologyanalysis --- diff --git a/topics/ecology/tutorials/obisindicators/tutorial.md b/topics/ecology/tutorials/obisindicators/tutorial.md index c9dba1096c6351..53fe6f506abb9c 100644 --- a/topics/ecology/tutorials/obisindicators/tutorial.md +++ b/topics/ecology/tutorials/obisindicators/tutorial.md @@ -25,6 +25,8 @@ contributions: - fairease - eurosciencegateway - pndb + +subtopic: ecologyanalysis --- diff --git a/topics/ecology/tutorials/panoply_ebv/tutorial.md b/topics/ecology/tutorials/panoply_ebv/tutorial.md index 32c44112cb167e..ea88461f2f4073 100644 --- a/topics/ecology/tutorials/panoply_ebv/tutorial.md +++ b/topics/ecology/tutorials/panoply_ebv/tutorial.md @@ -30,7 +30,8 @@ contributions: - gallantries - fairease - pndb - + +subtopic: ecologyviz --- diff --git a/topics/ecology/tutorials/phylogeny-data-prep/tutorial.md b/topics/ecology/tutorials/phylogeny-data-prep/tutorial.md index 3db044b96a382c..4f9210c5c8dce6 100644 --- a/topics/ecology/tutorials/phylogeny-data-prep/tutorial.md +++ b/topics/ecology/tutorials/phylogeny-data-prep/tutorial.md @@ -32,6 +32,7 @@ contributors: - roncoronimiguel - brigidagallone +subtopic: ecologyanalysis --- A robust and well-resolved phylogenetic classification is essential to understand genetic relationships within and between species and the evolution of their phenotypic diversity. In the last decade the genomic revolution has represented a drastic change in the amount of data used for phylogenetic inference. The single-gene approach using universal phylogenetic markers for the different lineages across the tree of life, is now being replaced by the assembly of taxon-rich and genome-scale data matrices, the so called phylogenomic approach. diff --git a/topics/ecology/tutorials/ref-based-rad-seq/tutorial.md b/topics/ecology/tutorials/ref-based-rad-seq/tutorial.md index 7031340757fdd2..40cbec82b5461a 100644 --- a/topics/ecology/tutorials/ref-based-rad-seq/tutorial.md +++ b/topics/ecology/tutorials/ref-based-rad-seq/tutorial.md @@ -21,6 +21,8 @@ time_estimation: "8h" key_points: contributors: - yvanlebras + +subtopic: ecologyanalysis --- diff --git a/topics/ecology/tutorials/regionalGAM/tutorial.md b/topics/ecology/tutorials/regionalGAM/tutorial.md index f9651724ff171b..bbade62ce63d96 100644 --- a/topics/ecology/tutorials/regionalGAM/tutorial.md +++ b/topics/ecology/tutorials/regionalGAM/tutorial.md @@ -25,6 +25,8 @@ contributors: - yvanlebras - bebatut - sbenateau + +subtopic: ecologyanalysis --- diff --git a/topics/ecology/tutorials/remote-sensing/tutorial.md b/topics/ecology/tutorials/remote-sensing/tutorial.md index b6aa25c17151b4..090dd5c26c1ff7 100644 --- a/topics/ecology/tutorials/remote-sensing/tutorial.md +++ b/topics/ecology/tutorials/remote-sensing/tutorial.md @@ -24,6 +24,8 @@ contributions: - yvanlebras funding: - pndb + +subtopic: ecologyanalysis --- diff --git a/topics/ecology/tutorials/species-distribution-modeling/tutorial.md b/topics/ecology/tutorials/species-distribution-modeling/tutorial.md index feb943d88494b5..729ed8aacfe3d8 100644 --- a/topics/ecology/tutorials/species-distribution-modeling/tutorial.md +++ b/topics/ecology/tutorials/species-distribution-modeling/tutorial.md @@ -23,6 +23,8 @@ contributors: - emichn - yvanlebras - bebatut + +subtopic: ecologyanalysis --- diff --git a/topics/ecology/tutorials/x-array-map-plot/tutorial.md b/topics/ecology/tutorials/x-array-map-plot/tutorial.md index 28c3dd15becc1e..8618a008a1d1c9 100644 --- a/topics/ecology/tutorials/x-array-map-plot/tutorial.md +++ b/topics/ecology/tutorials/x-array-map-plot/tutorial.md @@ -27,6 +27,7 @@ tags: contributors: - Quickbeasts51429 +subtopic: ecologyviz ---