From a3edbc2a851320c213dd6495922c8f2499d8c949 Mon Sep 17 00:00:00 2001 From: Delphine-L Date: Tue, 26 Sep 2023 13:37:43 -0400 Subject: [PATCH] addition of workflow for assembly with hic phasing and its tests --- .../.dockstore.yml | 7 + .../Assembly-Hifi-HiC-phasing-VGP4-tests.yml | 60 + .../Assembly-Hifi-HiC-phasing-VGP4.ga | 3311 +++++++++++++++++ .../Genomescope Model Parameters.tabular | 1 + 4 files changed, 3379 insertions(+) create mode 100644 workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/.dockstore.yml create mode 100644 workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/Assembly-Hifi-HiC-phasing-VGP4-tests.yml create mode 100644 workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/Assembly-Hifi-HiC-phasing-VGP4.ga create mode 100644 workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/test-data/Genomescope Model Parameters.tabular diff --git a/workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/.dockstore.yml b/workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/.dockstore.yml new file mode 100644 index 000000000..67d448932 --- /dev/null +++ b/workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/.dockstore.yml @@ -0,0 +1,7 @@ +version: 1.2 +workflows: +- name: main + primaryDescriptorPath: /Assembly-Hifi-HiC-phasing-VGP4.ga + subclass: Galaxy + testParameterFiles: + - /Assembly-Hifi-HiC-phasing-VGP4-tests.yml diff --git a/workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/Assembly-Hifi-HiC-phasing-VGP4-tests.yml b/workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/Assembly-Hifi-HiC-phasing-VGP4-tests.yml new file mode 100644 index 000000000..1e9bad77e --- /dev/null +++ b/workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/Assembly-Hifi-HiC-phasing-VGP4-tests.yml @@ -0,0 +1,60 @@ +- doc: Test outline for Assembly-Hifi-HiC-phasing-VGP4 + job: + HiC forward reads: + class: File + location: 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