diff --git a/ush/sub_cheyenne b/ush/sub_cheyenne deleted file mode 100644 index 7389bfeb24..0000000000 --- a/ush/sub_cheyenne +++ /dev/null @@ -1,169 +0,0 @@ -#!/bin/sh --login -set -x -echo "starting sub_cheyenne" -usage="\ -Usage: $0 [options] executable [args] - where the options are: - -a account account (default: none) - -b binding run smt binding or not (default:NO) - -d dirin initial directory (default: cwd) - -e envars copy comma-separated environment variables - -g group group name - -i append standard input to command file - -j jobname specify jobname (default: executable basename) - -m machine machine on which to run (default: current) - -n write command file to stdout rather than submitting it - -o output specify output file (default: jobname.out) - -p procs[/nodes[/ppreq] - number of MPI tasks and optional nodes or Bblocking and - ppreq option (N or S) (defaults: serial, Bunlimited, S) - -q queue[/qpreq] queue name and optional requirement, e.g. dev/P - (defaults: 1 if serial or dev if parallel and none) - (queue 3 or 4 is dev or prod with twice tasks over ip) - (options: P=parallel, B=bigmem, b=batch) - -r rmem[/rcpu] resources memory and cpus/task (default: '1024 mb', 1) - -t timew wall time limit in [[hh:]mm:]ss format (default: 900) - -u userid userid to run under (default: self) - -v verbose mode - -w when when to run, in yyyymmddhh[mm], +hh[mm], thh[mm], or - Thh[mm] (full, incremental, today or tomorrow) format - (default: now) -Function: This command submits a job to the batch queue." -subcmd="$*" -stdin=NO -nosub=NO -account="" -binding="NO" -dirin="" -envars="" -group="" -jobname="" -machine="" -output="" -procs=0 -nodes="" -ppreq="" -queue="" -qpreq="" -rmem="1024" -rcpu="1" -timew="900" -userid="" -verbose=NO -when="" -while getopts a:b:d:e:g:ij:m:no:p:q:r:t:u:vw: opt;do - case $opt in - a) account="$OPTARG";; - b) binding="$OPTARG";; - d) dirin="$OPTARG";; - e) envars="$OPTARG";; - g) group="$OPTARG";; - i) stdin=YES;; - j) jobname=$OPTARG;; - m) machine="$OPTARG";; - n) nosub=YES;; - o) output=$OPTARG;; - p) procs=$(echo $OPTARG/|cut -d/ -f1);nodes=$(echo $OPTARG/|cut -d/ -f2);ppreq=$(echo $OPTARG/|cut -d/ -f3);; - q) queue=$(echo $OPTARG/|cut -d/ -f1);qpreq=$(echo $OPTARG/|cut -d/ -f2);; - r) rmem=$(echo $OPTARG/|cut -d/ -f1);rcpu=$(echo $OPTARG/|cut -d/ -f2);; - t) timew=$OPTARG;; - u) userid=$OPTARG;; - v) verbose=YES;; - w) when=$OPTARG;; - \?) echo $0: invalid option >&2;echo "$usage" >&2;exit 1;; - esac -done -shift $(($OPTIND-1)) -if [[ $# -eq 0 ]];then - echo $0: missing executable name >&2;echo "$usage" >&2;exit 1 -fi -exec=$1 -if [[ ! -s $exec ]]&&which $exec >/dev/null 2>&1;then - exec=$(which $exec) -fi -shift -args="$*" -bn=$(basename $exec) -export jobname=${jobname:-$bn} -output=${output:-$jobname.out} -myuser=$LOGNAME -myhost=$(hostname) - -DATA=/glade/scratch/$LOGNAME/tmp -mkdir -p $DATA - -timew=${timew:-01:20:00} -task_node=${task_node:-$procs} -size=$((nodes*task_node)) -envars=$envars -threads=${rcpu:-1} - -export TZ=GMT -cfile=$DATA/sub$$ -> $cfile -echo "#!/bin/sh --login" >> $cfile -echo "" >> $cfile -echo "#PBS -o $output" >> $cfile -echo "#PBS -N $jobname" >> $cfile -echo "#PBS -q $queue" >> $cfile -echo "#PBS -l walltime=$timew" >> $cfile -echo "#PBS -l select=$nodes:ncpus=$procs:mpiprocs=$procs" >> $cfile -echo "#PBS -j oe" >> $cfile -echo "#PBS -A $accnt" >> $cfile -echo "#PBS -V" >> $cfile - -echo "" >>$cfile -echo "export ntasks=$(( $nodes * $procs ))" >> $cfile -echo "export ppn=$procs" >> $cfile -echo "export threads=$threads" >> $cfile -echo "export OMP_NUM_THREADS=$threads" >> $cfile -echo "ulimit -s unlimited" >> $cfile -echo "" >>$cfile -echo ". "$(awk '{ print $1, $2, $3, $4, $5, $6, $7, $8, $9 }' $regdir/regression_var.out) >>$cfile -echo "" >>$cfile - -echo "cfile = $cfile" -echo "source /glade/u/apps/ch/modulefiles/default/localinit/localinit.sh >> $cfile" -echo "module purge" >> $cfile -echo "module use $modulefiles" >> $cfile -echo "module load gsi_cheyenne.intel" >> $cfile -echo "module list" >> $cfile - -cat $exec >> $cfile - -if [[ $nosub = YES ]];then - cat $cfile - exit -elif [[ $verbose = YES ]];then - set -x - cat $cfile -fi - - -if [[ $stdin = YES ]];then - cat -fi >>$cfile -if [[ $nosub = YES ]];then - cat $cfile - exit -elif [[ $verbose = YES ]];then - set -x - cat $cfile -fi -qsub=${qsub:-qsub} - -ofile=$DATA/subout$$ ->$ofile -chmod 777 $ofile -$qsub $cfile >$ofile -rc=$? -cat $ofile -if [[ -w $SUBLOG ]];then - jobn=$(grep -i submitted $ofile|head -n1|cut -d\" -f2) - date -u +"%Y%m%d%H%M%S : $subcmd : $jobn" >>$SUBLOG -fi -rm $cfile $ofile -[[ $MKDATA = YES ]] && rmdir $DATA -echo "ending sub_cheyenne" -exit $rc -