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SO_imports.owl
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SO_imports.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/obi/dev/import/SO_imports.owl#"
xml:base="http://purl.obolibrary.org/obo/obi/dev/import/SO_imports.owl"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/obi/dev/import/SO_imports.owl"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</obo:IAO_0000111>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
<rdfs:label xml:lang="en">imported from</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000031 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000031"/>
<!-- http://purl.obolibrary.org/obo/PATO_0001241 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001241"/>
<!-- http://purl.obolibrary.org/obo/SO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">region</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/so.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">region</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/SO_0000104 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0000104">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0000001"/>
<obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">polypeptide</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/so.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">polypeptide</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/SO_0000148 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0000148">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0000353"/>
<obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">supercontig</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/so.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">supercontig</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/SO_0000149 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0000149">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0000353"/>
<obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">contig</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/so.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">contig</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/SO_0000235 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0000235">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0005836"/>
<obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TF_binding_site</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A DNA site where a transcription factor binds.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/so.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TF_binding_site</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/SO_0000276 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0000276">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0000001"/>
<obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">miRNA</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene (or the product of other non coding RNA genes. Micro RNAs are produced from precursor molecules (SO:0001244) that can form local hairpin structures, which ordinarily are processed (usually via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/so.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">miRNA</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/SO_0000353 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0000353">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0001248"/>
<obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sequence_assembly</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/so.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">sequence_assembly</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/SO_0000988 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0000988">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001241"/>
<obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">circular</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality of a nucleotide polymer that has no terminal nucleotide residues.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/so.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">circular</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/SO_0001248 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0001248">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0001410"/>
<obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">assembly</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A region of the genome of known length that is composed by ordering and aligning two or more different regions.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/so.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">assembly</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/SO_0001410 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0001410">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0000001"/>
<obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">experimental_feature</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/so.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">experimental_feature</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/SO_0005836 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/SO_0005836">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/SO_0000001"/>
<obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">regulatory_region</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A region of sequence that is involved in the control of a biological process.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/so.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">regulatory_region</rdfs:label>
</owl:Class>
</rdf:RDF>
<!-- Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi -->