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ploteig calls /home/np29/bin/fixgreen #13
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Hi, ##Error: gnuplot> plot "/leofs/zengchq_group/sohail/softwares/Eigensoft/EIG-6.1.4/TEST/example.eval.1:2:Case" using ($2)_1:($3)_1 title "Case" , "/leofs/zengchq_group/sohail/softwares/Eigensoft/EIG-6.1.4/TEST/example.eval.1:2:Control" using ($2)_1:($3)_1 title "Control" Can't exec "/home/np29/bin/fixgreen": No such file or directory at ./ploteig.pl line 138, line 5. |
Sorry to put you through this. Nick On Wed, Nov 16, 2016 at 3:53 AM, SOHAIL [email protected] wrote:
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Thank you @nick! |
Hi, I am running in to the same problem : The command is
The error is
Shall I do the same thing you suggested above? I.e., commenting "system "/home/np29/bin/fixgreen $psfile" ;" in ploteig file? |
Yes please. I will fix this soon. gnuplot produces (or used to)
green that is nearly invisible when printed...
N
…On Thu, Jun 8, 2017 at 7:00 PM, Farnush Farhadi ***@***.***> wrote:
Hi,
I am running in to the same problem :
*The command is*
smartpca.perl -i tmp/GenomTranscriptomTwinsMD_c1_QC_pruned_IBD.ped -a
tmp/GenomTranscriptomTwinsMD_c1_QC_pruned_IBD.map -b
tmp/GenomTranscriptomTwinsMD_c1_QC_pruned_IBD.fam -s 6 -e out/eval -l
out/elog -o out/pca -p out/plot
*The error is*
ploteig -i out/pca.evec -c 1:2 -p Control -x -y -o out/plot.xtxt
number of fields: 12
Control
Can't exec "/home/np29/bin/fixgreen": No such file or directory at
/usr/local/bin/ploteig line 138, line 1984.
evec2pca-ped.perl 10 out/pca.evec tmp/GenomTranscriptomTwinsMD_c1_QC_pruned_IBD.fam
out/pca
Shall I do the same thing you suggested above? I.e., commenting "system
"/home/np29/bin/fixgreen $psfile" ;" in *ploteig* file?
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Thank you. |
Well I think you must be. If you comment out the call to fixgreen
you can't be calling it...
Nick
…On Thu, Jun 8, 2017 at 7:54 PM, Farnush Farhadi ***@***.***> wrote:
Thank you.
I have commented the corresponding line but still I get the error. Am I
missing anything?
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