You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I've used convertf many times without issues, but am now running into a problem where it doesn't consider my samples valid. I am trying to convert bed/bim/fam files to geno/snp/ind files retaining a subset of individuals with the following par.file:
I've also attempted running it with different outputformats, e.g. PACKEDANCESTRYMAP or without a specified outputformat line.
Using the following command:
Hi,
I've used convertf many times without issues, but am now running into a problem where it doesn't consider my samples valid. I am trying to convert bed/bim/fam files to geno/snp/ind files retaining a subset of individuals with the following par.file:
I've also attempted running it with different outputformats, e.g. PACKEDANCESTRYMAP or without a specified outputformat line.
Using the following command:
Generates the following log:
What might explain the software to consider my samples invalid? Here's a head of my .fam file:
and here's a head of my .bim file:
The text was updated successfully, but these errors were encountered: