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blobtools didn't work with nt hits #111

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wqhf opened this issue Nov 26, 2020 · 0 comments
Open

blobtools didn't work with nt hits #111

wqhf opened this issue Nov 26, 2020 · 0 comments

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@wqhf
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wqhf commented Nov 26, 2020

Hello,

I read the instruction, blobtools_manuscript of the tool.
I found that the hits from diamond(blastx) were convert into a four columns taxified file, but hits from blastn (-outfmt ’6 qseqid staxids bitscore std’) were directly used. The problem is that the blastn hits (database nt) didn't contain the taxonomy part and there also wasn't a conversion file in the DB for genomic_nucleotide_gi to tax_id. Please if there any solution for me?

yuweiqiang

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