Bugfix and update versions

requirements_dev.txt

@@ -1,8 +1,8 @@
-flake8==3.9.2
-tox==3.24.3
-pytest==6.2.5
-pytest-cov==2.12.1
-mypy===0.910
+flake8==7.1.1
+tox==4.18.1
+pytest==8.3.2
+pytest-cov==5.0.0
+mypy===1.11.2
+build==1.2.2
+twine==5.1.1
 gcapi
-build
-twine

setup.cfg

@@ -12,6 +12,7 @@ classifiers =
     Programming Language :: Python :: 3.9
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
+    Programming Language :: Python :: 3.12
 
 [options]
 packages =

setup.py

@@ -63,7 +63,7 @@ def run(self):
         long_description = fh.read()
 
     setuptools.setup(
-        version='1.4.8',  # also update version in metrics.py -> version
+        version='1.4.9',  # also update version in metrics.py -> version
         author_email='[email protected]',
         long_description=long_description,
         long_description_content_type="text/markdown",

src/picai_eval/eval.py

@@ -160,7 +160,7 @@ def evaluate_case(
             overlap = overlap_matrix[lesion_id, lesion_candidate_id]
             overlap -= 1  # return overlap to [0, 1]
 
-            assert overlap > min_overlap, "Overlap must be greater than min_overlap!"
+            assert overlap >= min_overlap, "Overlap must be at least `min_overlap`!"
 
             y_list.append((1, lesion_confidence, overlap))
 

tests/Development-README.md

@@ -29,5 +29,5 @@ AutoPEP8 for formatting (this can be done automatically on save, see e.g. https:
 # Push release to PyPI
 1. Increase version in setup.py, and set below
 2. Build: `python -m build`
-3. Test package distribution: `python -m twine upload --repository testpypi dist/*1.4.3*`
-4. Distribute package to PyPI: `python -m twine upload dist/*1.4.3*`
+3. Test package distribution: `python -m twine upload --repository testpypi dist/*1.4.9*`
+4. Distribute package to PyPI: `python -m twine upload dist/*1.4.9*`

tox.ini

@@ -1,14 +1,12 @@
 [tox]
 minversion = 3.8.0
-envlist = py36, py37, py38, py39, flake8
+envlist = py38, py312, flake8
 isolated_build = true
 
 [gh-actions]
 python =
-    3.6: py36
-    3.7: py37
     3.8: py38
-    3.9: py39, flake8
+    3.12: py312, flake8
 
 [testenv]
 setenv =
@@ -19,13 +17,12 @@ commands =
     pytest --basetemp={envtmpdir}
 
 [testenv:flake8]
-basepython = python3.9
+basepython = python3.12
 deps = flake8
 commands = flake8 src tests
 
 [testenv:mypy]
-basepython = python3.9
+basepython = python3.12
 deps =
     -r{toxinidir}/requirements_dev.txt
 commands = mypy src
-