From 3ac4e72ac03e52ce614a796e5cc1885885e79a0a Mon Sep 17 00:00:00 2001 From: lundq163 <102316699+lundq163@users.noreply.github.com> Date: Wed, 3 Jul 2024 14:05:51 -0500 Subject: [PATCH] Update Dockerfile using v3.3.2 --- Dockerfile | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/Dockerfile b/Dockerfile index e666e1f..31f8edc 100755 --- a/Dockerfile +++ b/Dockerfile @@ -1,7 +1,7 @@ FROM nvcr.io/nvidia/pytorch:21.11-py3 # Manually update the BIBSnet version when building -ENV BIBSNET_VERSION="3.3.1" +ENV BIBSNET_VERSION="3.3.2" # Prepare environment RUN apt-get update && \ @@ -90,15 +90,15 @@ ENV nnUNet_preprocessed="/opt/nnUNet/nnUNet_raw_data_base/nnUNet_preprocessed" \ RUN mkdir -p /opt/nnUNet/nnUNet_raw_data_base/ /opt/nnUNet/nnUNet_raw_data_base/nnUNet_preprocessed /opt/nnUNet/nnUNet_raw_data_base/nnUNet_trained_models/nnUNet /home/bibsnet/data #COPY trained_models/Task512_BCP_ABCD_Neonates_SynthSegDownsample.zip /opt/nnUNet/nnUNet_raw_data_base/nnUNet_trained_models/nnUNet -RUN curl -sSL "https://s3.msi.umn.edu/bibsnet-data/bibsnet-v3.3.1.tar.gz" | tar -xzpf - Task526_previous_BIBSNet_Production_Model.tar.gz -O | tar -xzpC /opt/nnUNet/nnUNet_raw_data_base/nnUNet_trained_models/nnUNet --no-same-owner --strip-components 1 && \ - curl -sSL "https://s3.msi.umn.edu/bibsnet-data/bibsnet-v3.3.1.tar.gz" | tar -xzpf - Task514_BCP_ABCD_Neonates_SynthSeg_T1Only.tar.gz -O | tar -xzpC /opt/nnUNet/nnUNet_raw_data_base/nnUNet_trained_models/nnUNet --no-same-owner --strip-components 1 &&\ - curl -sSL "https://s3.msi.umn.edu/bibsnet-data/bibsnet-v3.3.1.tar.gz" | tar -xzpf - Task515_BCP_ABCD_Neonates_SynthSeg_T2Only.tar.gz -O | tar -xzpC /opt/nnUNet/nnUNet_raw_data_base/nnUNet_trained_models/nnUNet --no-same-owner --strip-components 1 && \ - curl -sSL "https://s3.msi.umn.edu/bibsnet-data/bibsnet-v3.3.1.tar.gz" | tar -xzpf - Task540_BIBSNet_Production_Model.tar.gz -O | tar -xzpC /opt/nnUNet/nnUNet_raw_data_base/nnUNet_trained_models/nnUNet --no-same-owner --strip-components 1 +RUN curl -sSL "https://s3.msi.umn.edu/bibsnet-data/bibsnet-v3.3.2.tar.gz" | tar -xzpf - Task526_previous_BIBSNet_Production_Model.tar.gz -O | tar -xzpC /opt/nnUNet/nnUNet_raw_data_base/nnUNet_trained_models/nnUNet --no-same-owner --strip-components 1 && \ + curl -sSL "https://s3.msi.umn.edu/bibsnet-data/bibsnet-v3.3.2.tar.gz" | tar -xzpf - Task514_BCP_ABCD_Neonates_SynthSeg_T1Only.tar.gz -O | tar -xzpC /opt/nnUNet/nnUNet_raw_data_base/nnUNet_trained_models/nnUNet --no-same-owner --strip-components 1 &&\ + curl -sSL "https://s3.msi.umn.edu/bibsnet-data/bibsnet-v3.3.2.tar.gz" | tar -xzpf - Task515_BCP_ABCD_Neonates_SynthSeg_T2Only.tar.gz -O | tar -xzpC /opt/nnUNet/nnUNet_raw_data_base/nnUNet_trained_models/nnUNet --no-same-owner --strip-components 1 && \ + curl -sSL "https://s3.msi.umn.edu/bibsnet-data/bibsnet-v3.3.2.tar.gz" | tar -xzpf - Task540_BIBSNet_Production_Model.tar.gz -O | tar -xzpC /opt/nnUNet/nnUNet_raw_data_base/nnUNet_trained_models/nnUNet --no-same-owner --strip-components 1 COPY run.py /home/bibsnet/run.py COPY src /home/bibsnet/src COPY bin /home/bibsnet/bin -RUN curl -sSL "https://s3.msi.umn.edu/bibsnet-data/bibsnet-v3.3.1.tar.gz" | tar -xzpf - data.tar.gz -O | tar -xzpC /home/bibsnet/data --no-same-owner --strip-components 1 +RUN curl -sSL "https://s3.msi.umn.edu/bibsnet-data/bibsnet-v3.3.2.tar.gz" | tar -xzpf - data.tar.gz -O | tar -xzpC /home/bibsnet/data --no-same-owner --strip-components 1 COPY requirements.txt /home/bibsnet/requirements.txt