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manuscript.tex
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% latexmacros: CSC's manuscript template
%
% jpc: 11/10/2018
% rgj:
\documentclass[draft,nofootinbib,aps,prl,twocolumn,showpacs,groupaddress,preprintnumbers,floatfix]{revtex4-1}
\usepackage{dynlearn}
\begin{document}
\def\ourTitle{%
Title goes here.
}
\def\ourAbstract{%
Abstract goes here.
}
\def\ourKeywords{%
stochastic process, hidden Markov model, \texorpdfstring{\eM}{epsilon-machine}, causal states, mutual information.
}
\hypersetup{
pdfauthor={James P. Crutchfield},
pdftitle={\ourTitle},
pdfsubject={\ourAbstract},
pdfkeywords={\ourKeywords},
pdfproducer={},
pdfcreator={}
}
\author{Ryan G. James}
\email{[email protected]}
\affiliation{Complexity Sciences Center and Physics Department,
University of California at Davis, One Shields Avenue, Davis, CA 95616}
% \author{John R. Mahoney}
% \email{[email protected]}
% \affiliation{Complexity Sciences Center and Physics Department,
% University of California at Davis, One Shields Avenue, Davis, CA 95616}
\author{James P. Crutchfield}
\email{[email protected]}
\affiliation{Complexity Sciences Center and Physics Department,
University of California at Davis, One Shields Avenue, Davis, CA 95616}
% \affiliation{Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501}
\date{\today}
\bibliographystyle{unsrt}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% The paper content
\title{\ourTitle}
\begin{abstract}
\ourAbstract
\vspace{0.1in}
\noindent
{\bf Keywords}: \ourKeywords
\end{abstract}
\pacs{
05.45.-a % Nonlinear dynamics and nonlinear dynamical systems
89.75.Kd % Complex Systems: Patterns
89.70.+c % Information science
05.45.Tp % Time series analysis
%02.50.Ey % Stochastic processes
%02.50.-r % Probability theory, stochastic processes, and statistics
%02.50.Ga % Markov processes
%05.20.-y % Classical statistical mechanics
}
\preprint{\sfiwp{13-11-XXX}}
\preprint{\arxiv{1312.XXXX}}
\title{\ourTitle}
\date{\today}
\maketitle
\tableofcontents
\setstretch{1.1}
\listoffixmes
\section{Introduction}
\label{sec:introduction}
This is an introduction. See, \eg \cref{fig:even_process} for an example of an \eM. See \cref{fig:feedback_xor_channel} for an example of an \eT.
\fxnote{This is a note}
\fxwarning{This is a warning}
\fxerror{This is an error}
\fxfatal{This is a fatal error (will block compiling in final mode)}
\rgjnote{This is a note for Ryan!}
\section{Computational Mechanics Symbols}
\label{sec:Symbols}
An up arrow $\uparrow$.
A ket $\ket{A}$.
% Test for harpoon-like forward and reverse time arrows
% From cmvec.sty. However, that uses constructs that don't compile at arXiv.org
% and journals.
From cmvec.sty: Arrow and harpoon symbol accents. Note, the TeX constructions
do not compile on arXiv.org and most journals. Until cmvec.sty is rewritten to
address this, then the following should not be used in LaTeX heading for
publication.
NOTE: For regular use of this file as a manuscript template, arrows and
harpoons here are commented out, as is cmvec.sty in dynlearn.sty.
Forward and reverse time arrows:
% $\CMlarrow{X}$
% $\CMrarrow{X}$
% $\CMlrarrow{X}$
Extensible versions:
% $\CMxlarrow{X}$
% $\CMxrarrow{X}$
% $\CMxlrarrow{X}$
Harpoon forward and reverse time arrows:
% $\CMlharpoon{X}$
% $\CMrharpoon{X}$
% $\CMlrharpoon{X}$
Extensible versions:
% $\CMxlharpoon{X}$
% $\CMxrharpoon{X}$
% $\CMxlrharpoon{X}$
\section{Figures}
\label{sec:Figures}
\begin{figure}
\centering
\begin{tikzpicture}[style=vaucanson,
bend angle=15,
scale=1,
every node/.style={transform shape}]
\node [state] (A) {A};
\node [state] (B) [right of=A] {B};
\path (A) edge [loop left] node {$\Edge{0}{\half}$} (A)
(A) edge [bend left] node {$\Edge{1}{\half}$} (B)
(B) edge [bend left] node {$\Edge{1}{1}$} (A);
% added for symmetry
\path (B) edge [loop right, draw=none] node {} (B);
\end{tikzpicture}
\caption{The \eM for the Even process.}
\label{fig:even_process}
\end{figure}
\begin{figure}
\centering
\begin{tikzpicture}[style=vaucanson,
bend angle=15,
scale=1,
every node/.style={transform shape}]
\node [state] (A) {A};
\node [state] (B) [right of=A] {B};
\path (A) edge [loop left] node {$\TEdge{0}{0}{1}$} (A)
(A) edge [bend left] node {$\TEdge{1}{1}{1}$} (B)
(B) edge [loop right] node {$\TEdge{1}{0}{1}$} (B)
(B) edge [bend left] node {$\TEdge{0}{1}{1}$} (A);
\end{tikzpicture}
\caption{This is the \eT for the Feedback XOR channel.}
\label{fig:feedback_xor_channel}
\end{figure}
\section*{Acknowledgments}
\label{sec:acknowledgments}
We thank people for things.
\bibliography{chaos,ref}
\cleardoublepage
\appendix
\section{Appendix A}
\label{sec:appendix_a}
This is an appendix, if it is needed.
\end{document}