refactor: datacollector #4185
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| name: Continuous Integration | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| testing: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash | |
| container: complat/chemotion_eln_runner:main | |
| services: | |
| postgres: | |
| image: postgres:16 # https://hub.docker.com/_/postgres | |
| env: | |
| POSTGRES_PASSWORD: postgres # env variable required by postgres Docker container | |
| POSTGRES_USER: chemotion # optional env variable used in conjunction with POSTGRES_PASSWORD to set a user and their password | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| steps: | |
| - name: checkout repository | |
| uses: actions/checkout@v3 | |
| - name: create user for datacollectors testing | |
| run: | | |
| useradd testuser -ms /bin/bash | |
| mkdir /home/testuser/.ssh | |
| chown testuser:testuser /home/testuser/.ssh | |
| chmod 700 /home/testuser/.ssh | |
| mkdir -p $HOME/.ssh | |
| chmod 700 $HOME/.ssh | |
| service ssh restart | |
| ssh-keygen -t ed25519 -f $HOME/.ssh/id_test -N "" | |
| cat "${HOME}/.ssh/id_test.pub" | tee -a /home/testuser/.ssh/authorized_keys | |
| ssh-keyscan -H 127.0.0.1 >> $HOME/.ssh/known_hosts | |
| - name: configure repository | |
| run: | | |
| mv public/welcome-message-sample.md public/welcome-message.md | |
| cp .env.test.example .env.test | |
| cd config | |
| cp database.yml.gitlab database.yml | |
| cp -f datacollectors.yml.example datacollectors.yml | |
| cp -f profile_default.yml.example profile_default.yml | |
| cp -f shrine.yml.example shrine.yml | |
| cp -f storage.yml.example storage.yml | |
| cp -f radar.yml.example radar.yml | |
| touch klasses.json | |
| bundle config set without '' | |
| - name: configure postgres | |
| env: | |
| PG_ROLE: chemotion_test | |
| PG_ROLE_PASSWORD: 123456 | |
| PG_DATABASE: chemotion_test | |
| PGPASSWORD: postgres # env variable required by psql client | |
| run: | # host is service container name | |
| psql -h postgres -U chemotion -c "CREATE ROLE $PG_ROLE LOGIN CREATEDB NOSUPERUSER PASSWORD '$PG_ROLE_PASSWORD';" | |
| psql -h postgres -U chemotion -c "CREATE DATABASE $PG_DATABASE OWNER $PG_ROLE;" | |
| psql -d postgresql://$PG_ROLE:$PG_ROLE_PASSWORD@postgres/$PG_DATABASE -c 'CREATE EXTENSION IF NOT EXISTS "pg_trgm"; CREATE EXTENSION IF NOT EXISTS "hstore"; CREATE EXTENSION IF NOT EXISTS "uuid-ossp";' | |
| - name: bundle install | |
| run: bundle install | |
| - name: prepare postgres | |
| run: | | |
| RAILS_ENV=test bundle exec rake db:migrate | |
| RAILS_ENV=test bundle exec rake db:test:prepare | |
| - name: rspec unit | |
| run: | | |
| service ssh restart | |
| eval `ssh-agent` | |
| DATACOLLECTOR_FACTORY_SFTP_USER=testuser DATACOLLECTOR_FACTORY_SFTP_KEY=id_test RAILS_ENV=test bundle exec rspec --exclude-pattern spec/{features}/**/*_spec.rb spec/lib/datacollector | |
| - name: coverage rspec unit | |
| if: github.event.pull_request && (github.event.pull_request.head.repo.full_name == github.event.pull_request.base.repo.full_name) && (github.triggering_actor != 'dependabot[bot]') # don't run on PRs from forks because of missing write permission: https://github.com/orgs/community/discussions/26829 | |
| uses: zgosalvez/github-actions-report-lcov@v1 | |
| with: | |
| coverage-files: coverage/lcov/${{ github.event.repository.name }}.lcov | |
| minimum-coverage: 57 | |
| artifact-name: code-coverage-report | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |