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Adjust THREADS_PER_COMMAND for underpacked jobs #198

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gdevenyi opened this issue Aug 10, 2019 · 0 comments

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gdevenyi commented Aug 10, 2019

Problem arises like this
QBATCH_CHUNKSIZE=40
QBATCH_PPJ=80
QBATCH_CORES=40

This results in THREADS_PER_COMMAND=2 regardless of the actual length of joblist.

Instead, this should be adjusted for the length of the joblist if < chunksize

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