From d4a540bdc0968c3992f806622718f38b33b1b2e5 Mon Sep 17 00:00:00 2001 From: Gab-D-G Date: Mon, 25 Sep 2023 18:27:26 -0400 Subject: [PATCH] container build instructions were updated for Github containers. --- docs/installation.md | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/docs/installation.md b/docs/installation.md index 7990cdf..5a5ae90 100644 --- a/docs/installation.md +++ b/docs/installation.md @@ -10,15 +10,16 @@ However, this does not account for non-python dependencies found in `dependencie ## Container (Singularity/Docker) For most uses, we recommend instead using a containerized installation with [Singularity](https://singularity.lbl.gov) or [Docker](https://www.docker.com). Containers allow to build entire computing environments, grouping all dependencies required to run the software. This in turn reduces the burden of installing dependencies manually and ensures reproducible behavior of the software. Singularity is generally preferred over Docker since it requires less permission, and can thus be imported from most computing environment (e.g. high performance computing clusters such as Compute Canada.) -A containerized version of RABIES is available on [Docker Hub](https://hub.docker.com/r/gabdesgreg/rabies). After installing Singularity or Docker, the following command will pull and build the container: +A [containerized version](https://github.com/CoBrALab/RABIES/pkgs/container/rabies) of RABIES is available from Github. After installing Singularity or Docker, the following command will pull and build the container: * Install Singularity .sif file: ``` -singularity build rabies.sif docker://gabdesgreg/rabies:tagname +singularity build rabies.sif docker://ghcr.io/cobralab/rabies:latest ``` * Install Docker image: ``` -docker pull gabdesgreg/rabies:tagname +docker pull ghcr.io/cobralab/rabies:latest ``` +A specific tag version can be selected (instead of `latest`) from the [list online](https://github.com/CoBrALab/RABIES/pkgs/container/rabies). Versions prior to 0.5.0 are found on [Docker Hub](https://hub.docker.com/r/gabdesgreg/rabies). ## Neurodesk RABIES is also made available on the [Neurodesk platform](https://neurodesk.github.io/), as part of the [built-in tools](https://neurodesk.github.io/applications/) for neuroimaging. The Neurodesk platform allows for an entirely browser-based neuroimaging computing environment, with pre-built neuroimaging tools from the community, and aims at reducing needs for manual development of computing environments and at improving reproducible neuroimaging. More details on Neurodesk here . \ No newline at end of file