From 39372c581273d2e1aac369e1fedda735b2a25c31 Mon Sep 17 00:00:00 2001 From: hassanfa Date: Tue, 9 Nov 2021 16:45:13 +0100 Subject: [PATCH] =?UTF-8?q?Bump=20version:=208.1.0=20=E2=86=92=208.2.0?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .bumpversion.cfg | 3 ++- BALSAMIC/__init__.py | 2 +- BALSAMIC/__version__.py | 2 +- BALSAMIC/containers/balsamic/Dockerfile | 2 +- CITATION.cff | 2 +- README.rst | 4 ++-- docs/bioinfo_softwares.rst | 2 +- docs/user_guide.rst | 2 +- 8 files changed, 10 insertions(+), 9 deletions(-) diff --git a/.bumpversion.cfg b/.bumpversion.cfg index 2809b3c36..23c41a679 100644 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 8.1.0 +current_version = 8.2.0 commit = True tag = True tag_name = v{new_version} @@ -19,3 +19,4 @@ tag_name = v{new_version} [bumpversion:file:docs/user_guide.rst] search = {current_version} replace = {new_version} + diff --git a/BALSAMIC/__init__.py b/BALSAMIC/__init__.py index 70dab034f..26ef49ae9 100644 --- a/BALSAMIC/__init__.py +++ b/BALSAMIC/__init__.py @@ -1 +1 @@ -__version__ = "8.1.0" +__version__ = "8.2.0" diff --git a/BALSAMIC/__version__.py b/BALSAMIC/__version__.py index 70dab034f..26ef49ae9 100644 --- a/BALSAMIC/__version__.py +++ b/BALSAMIC/__version__.py @@ -1 +1 @@ -__version__ = "8.1.0" +__version__ = "8.2.0" diff --git a/BALSAMIC/containers/balsamic/Dockerfile b/BALSAMIC/containers/balsamic/Dockerfile index dadf7547f..b869f3ebf 100644 --- a/BALSAMIC/containers/balsamic/Dockerfile +++ b/BALSAMIC/containers/balsamic/Dockerfile @@ -6,7 +6,7 @@ LABEL about.documentation="https://balsamic.readthedocs.io/" LABEL about.license="MIT License (MIT)" LABEL about.maintainer="Hassan Foroughi hassan dot foroughi at scilifelab dot se" LABEL about.description="Bioinformatic analysis pipeline for somatic mutations in cancer" -LABEL about.version="8.1.0" +LABEL about.version="8.2.0" ENV PATH="/opt/conda/bin/:${PATH}" ENV MUSL_LOCPATH="/usr/share/i18n/locales/musl" diff --git a/CITATION.cff b/CITATION.cff index ec048d4ee..82f059270 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -18,5 +18,5 @@ authors: - family-names: "Wirta" given-names: "Valtteri" title: "BALSAMIC: Bioinformatic Analysis pipeLine for SomAtic MutatIons in Cancer" -version: v8.1.0 +version: v8.2.0 url: "https://github.com/Clinical-Genomics/BALSAMIC" diff --git a/README.rst b/README.rst index c045366e7..b9be2d0c5 100644 --- a/README.rst +++ b/README.rst @@ -4,7 +4,7 @@ -

Bioinformatic Analysis pipeLine for SomAtic MutatIons in Cancer (v 8.1.0)

+

Bioinformatic Analysis pipeLine for SomAtic MutatIons in Cancer (v 8.2.0)

FastQ to Annotated VCF

@@ -56,7 +56,7 @@ Snakemake cli given that there is a proper config file created. .. |docker_latest_build_status| image:: https://github.com/Clinical-Genomics/BALSAMIC/actions/workflows/docker_build_push.yml/badge.svg -.. |docker_latest_release_status| image:: https://github.com/Clinical-Genomics/BALSAMIC/actions/workflows/docker_build_push_release.yml/badge.svg?tag=v8.1.0 +.. |docker_latest_release_status| image:: https://github.com/Clinical-Genomics/BALSAMIC/actions/workflows/docker_build_push_release.yml/badge.svg?tag=v8.2.0 .. |snakemake_badge| image:: https://img.shields.io/badge/snakemake-%E2%89%A55.12.3-brightgreen.svg diff --git a/docs/bioinfo_softwares.rst b/docs/bioinfo_softwares.rst index b1bd0ab66..d18e3a793 100644 --- a/docs/bioinfo_softwares.rst +++ b/docs/bioinfo_softwares.rst @@ -2,7 +2,7 @@ Workflow ======== -BALSAMIC ( **version** = 8.1.0 ) uses myriad of tools and softwares to analyze fastq files. This section covers why each +BALSAMIC ( **version** = 8.2.0 ) uses myriad of tools and softwares to analyze fastq files. This section covers why each one is included: usage and parameters, and relevant external links. diff --git a/docs/user_guide.rst b/docs/user_guide.rst index 6bf6e1e46..776363993 100644 --- a/docs/user_guide.rst +++ b/docs/user_guide.rst @@ -2,7 +2,7 @@ Short tutorial ============== -Here a short toturial is provided for BALSAMIC (**version** = 8.1.0). +Here a short toturial is provided for BALSAMIC (**version** = 8.2.0). Running a test sample ---------------------