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DOI

Bioinformatics training materials

Do you like this collection? You're going to love glittr.org! The collection below is still maintained but updated by glittr.org. So, if you have anything to add or to ask, see you there!

If you haven't stopped reading, you're one of the few that still prefer the old school README :neckbeard:. Nice!

Below you'll find a curated list of bioinformatics training material. All material is:

  • In a GitHub or GitLab repository (repositories in self-managed instances of GitLab are not supported anymore..)
  • Free to use
  • Written in markdown or similar

NOTE: This list of courses is selected only based on the above criteria. There are no checks on quality.

Contents

Scripting and languages

Version control

Unix/Linux

Python

R

Quarto

Shiny

Julia

Data visualization

Java

GNU Make

MATLAB/Octave

SQL

C/C++

Computational methods and pipelines

Containerization

Galaxy

High performance computing

Workflows

Image analysis

Cloud computing

Omics analysis

Genomics

Next generation sequencing

Transcriptomics

RNA-seq

Single-cell sequencing

Variant analysis

ChIP-seq

Comparative genomics

Epigenetics

Genome annotation

Genome assembly

Metagenomics

Epidemiology

Multiomics

Spatial transcriptomics

Long read sequencing

Metabolomics

Proteomics

Pathways and Networks

Reproducibility and data management

Data management

FAIR data

Reproducibility

Statistics and machine learning

Data science

Statistics

Machine learning

Others

General