Touring: data handling

[thinkh]

@keckelt commented on Thu Jan 31 2019

TODO:

• check if/how combined columns are handled

• improve performance for large tables (e.g. gene)
  i.e. do not always build the matrix, just get what is needed.

• check why uploaded data is not working

• check the lineup data accessors (differences between scores & database columns) --> probably unify the

• check if use of column field as identifier is appropriate

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@keckelt commented on Thu Jan 31 2019

Also:

• how is mapped data handled?

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@keckelt commented on Wed Feb 20 2019

Also:
When we read the values from the score columns, they might still be loading. Then all values are NaN and the scores cannot be computed.

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@thinkh commented on Mon Sep 02 2019

@keckelt What is the status of this issue? Is this finished/implemented or should datavisyn continue with this?

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@keckelt commented on Tue Sep 03 2019

I wanted to look into this when updating for lineup v4 and merging into tdp_core#develop

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@thinkh commented on Tue Sep 03 2019

Ok, thanks. I will keep this in mind when testing and integrating Tourdino (i.e., merge into develop). For LineUp v4 we will need a dedicated test.

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@oltionchampari commented on Fri Jan 10 2020

TODO:

• check if/how combined columns are handled

Combined/Nested columns are ignored from the current implementation --> investigate how to include them in the calculations.

see #21

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@oltionchampari commented on Fri Jan 10 2020

• improve performance for large tables (e.g. gene)
  i.e. do not always build the matrix, just get what is needed.

Significant performance improvement has been done in #18.
Still interacting with the UI is not ideal and further improvement needs to be done when transforming large data sets.

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@oltionchampari commented on Mon Jan 13 2020

In the current version of lineup v3 tdp_uploaded_data works as expected .