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how to call multiple-sample variants #136

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ChenDepp opened this issue Sep 8, 2023 · 4 comments
Open

how to call multiple-sample variants #136

ChenDepp opened this issue Sep 8, 2023 · 4 comments

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@ChenDepp
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ChenDepp commented Sep 8, 2023 •
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@andreas-wilm Hello, how to identify variants in multiple samples at the same time?
waiting for your reply!
thanks you!
@andreas-wilm
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Hi @ChenDepp, LoFreq doesn't support this. Sorry

@ChenDepp
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@andreas-wilm Thank you for your reply
Therefore, I can only identify the mutations independently for each sample, and then use bcftools merge to merge them to get the final vcf file containing all samples, right?

@andreas-wilm
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Yes, that's correct

@ChenDepp
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hi @andreas-wilm your answer help me a lot. thanks you

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@andreas-wilm @ChenDepp