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lofreq call-parallel will hang forever on subprocess error #128

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tfmorris opened this issue Jun 8, 2022 · 0 comments
Open

lofreq call-parallel will hang forever on subprocess error #128

tfmorris opened this issue Jun 8, 2022 · 0 comments

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@tfmorris
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tfmorris commented Jun 8, 2022

If one of the subprocesses errors (e.g. gets killed by the OOM killer), the parent process will hang forever because there's no timeout on the pool.join() here:

pool.join()# wait until all done

I suggest adding a timeout, even a very large one, to the join.

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