You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi,
I was wondering what data exactly we can find in the above mentioned vcf files. My guess is that the normal_relaxed.snv.vcf file contains all snvs that can be found in the normal sample. In the _stringent file more filters have been applied to the _relaxed file, so we will see a subgroup of the snvs from _relaxed.
The same would apply to the tumor_ files.
Is this correct? Because when looking at those files in the a genome browser the mutation frequency seems to be higher in the "_normal" file. So either I mixed something up in my labeling or I understood these files wrong.
Best, Max
The text was updated successfully, but these errors were encountered:
Hi,
I was wondering what data exactly we can find in the above mentioned vcf files. My guess is that the normal_relaxed.snv.vcf file contains all snvs that can be found in the normal sample. In the _stringent file more filters have been applied to the _relaxed file, so we will see a subgroup of the snvs from _relaxed.
The same would apply to the tumor_ files.
Is this correct? Because when looking at those files in the a genome browser the mutation frequency seems to be higher in the "_normal" file. So either I mixed something up in my labeling or I understood these files wrong.
Best, Max
The text was updated successfully, but these errors were encountered: