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dim_convert.py
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dim_convert.py
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"""
Convert stack to h5 format for CDeep3M
NCMIR/NBCR, UCSD -- CDeep3M -- Update: 08/2019 @mhaberl
"""
import numpy as np
def dim_convert(img, lb):
shape = img.shape
print(shape)
temp_img = np.zeros([shape[1], shape[2], shape[0]], dtype=img.dtype)
temp_lb = np.zeros([shape[1], shape[2], shape[0]], dtype=lb.dtype)
# temp_img = np.zeros([1024, 1024, shape[0]], dtype=img.dtype)
# temp_lb = np.zeros([1024,1024, shape[0]], dtype=lb.dtype)
for z in range(0, shape[0]):
temp_img[0:shape[1], 0:shape[2], z] = np.squeeze(img[z, :, :])
temp_lb[0:shape[1], 0:shape[2], z] = np.squeeze(lb[z, :, :])
# print(temp_img.shape)
# print(temp_lb.shape)
img = np.squeeze(temp_img)
lb = np.squeeze(temp_lb)
# print(img.shape)
# print(lb.shape)
return img, lb