PyIMOD is a set of Python classes that enable the manipulation of IMOD model files. PyIMOD supports both the reading/writing of existing model files as well as their generation from scratch. Once initialized, model, object, and contour properties can be easily edited. In addition, a variety of filters exist for separating objects based on size, distance from reference objects, and morphological parameters. PyIMOD was inspired by the MatTomo set of Matlab classes for IMOD.
- Python 2.7 (may work with other version)
- Opencv with python bindings
- Numpy
- Scipy
- scikit-learn