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I used creator to generate an imgCIF from b4_1_master.h5. In addition to my mail of 03-02-2023 I have some comments:
loop
_axis.id
_axis.type
_axis.equipment
_axis.depends_on
_axis.vector[1]
_axis.vector[2]
_axis.vector[3]
_axis.offset[1]
_axis.offset[2]
_axis.offset[3]
chi rotation goniometer detx -0.0046 0.0372 -0.9993 0 0 0
omega rotation goniometer . 1 0 0 0 0 0
two_theta rotation goniometer . 1 0 0 0 0 0
phi rotation goniometer chi 1 -0.0037 0.002 0 0 0
detx translation detector dety -1 0 0 -166.87357 172.49715 0
dety translation detector trans 0 1 0 0 0 0
trans translation detector omega 0 0 -1 0 0 -287.22243
==> chi should depend on omega
==> in the publication (he4557) _axis.equipment for two_theta was detector, not goniometer
==> trans should depend on two_theta
==> detx should depend on trans
==> dety depends on detx
==> detx vector should be [1 0 0]
==> dety vector should be [0 -1 0]
==> again _diffrn_detector_axis.axis.id is a pointer to axis.id, and thus should be trans
loop
_diffrn_scan_axis.scan_id
_diffrn_scan_axis.axis_id
_diffrn_scan_axis.displacement_start
_diffrn_scan_axis.displacement_increment
_diffrn_scan_axis.displacement_range
_diffrn_scan_axis.angle_start
_diffrn_scan_axis.angle_increment
_diffrn_scan_axis.angle_range
SCAN1 chi . . . 0.0 0 0
SCAN1 omega . . . 0.0 0.1 360.0
SCAN1 phi . . . 0.0 0 0
SCAN1 detx . . . 0.0 0 0
SCAN1 dety . . . 0.0 0 0
SCAN1 trans 287.2224260231453 0 0 . . .
==> only omega is scanned. Leave the other _axis.id out?? I don't mind if they stay in, but normally we use only one scan-axis
The construction with _diffrn_scan_axis and diifrn_scan_frame is different from the one we published (he5447) but seems OK to me.
loop
_diffrn_data_frame.id
_diffrn_data_frame.detector_element_id
_diffrn_data_frame.array_id
_diffrn_data_frame.binary_id
frm1 ELEMENT01 IMAGE01 1
frm2 ELEMENT01 IMAGE01 2
==> I have a question to @jamesrhester : _diffraction_data_frame.id should be a pointer to _array_structure.id but that data name is never given. Is that a problem?
==> Then, _diffrn_data_frame.array_id is also a pointer to _array_structure.id, so should be the same as _diffraction_data_frame.id ?
Now they are IMAGE01 and frm1 respectively.
==> I cannot find _array_data.id in the dictionary?
@jamesrhester can you please look if the construction with pointers to data is complete, not redundant and does not contain unnecessary data items
The text was updated successfully, but these errors were encountered:
I used creator to generate an imgCIF from b4_1_master.h5. In addition to my mail of 03-02-2023 I have some comments:
loop
_axis.id
_axis.type
_axis.equipment
_axis.depends_on
_axis.vector[1]
_axis.vector[2]
_axis.vector[3]
_axis.offset[1]
_axis.offset[2]
_axis.offset[3]
chi rotation goniometer detx -0.0046 0.0372 -0.9993 0 0 0
omega rotation goniometer . 1 0 0 0 0 0
two_theta rotation goniometer . 1 0 0 0 0 0
phi rotation goniometer chi 1 -0.0037 0.002 0 0 0
detx translation detector dety -1 0 0 -166.87357 172.49715 0
dety translation detector trans 0 1 0 0 0 0
trans translation detector omega 0 0 -1 0 0 -287.22243
==> chi should depend on omega
==> in the publication (he4557) _axis.equipment for two_theta was detector, not goniometer
==> trans should depend on two_theta
==> detx should depend on trans
==> dety depends on detx
==> detx vector should be [1 0 0]
==> dety vector should be [0 -1 0]
loop_
_array_structure_list_axis.axis_id
_array_structure_list_axis.axis_set_id
_array_structure_list_axis.displacement
_array_structure_list_axis.displacement_increment
array_x 1 0.0375 0.075
array_y 2 0.0375 0.075
==> _array_structure_list_axis.axis.id is a pointer to _axis.id above. So I think that array_x should be detx, and likewise for array_y
loop_
_diffrn_detector_axis.axis_id
_diffrn_detector_axis.detector_id
det_z det1
==> again _diffrn_detector_axis.axis.id is a pointer to axis.id, and thus should be trans
loop
_diffrn_scan_axis.scan_id
_diffrn_scan_axis.axis_id
_diffrn_scan_axis.displacement_start
_diffrn_scan_axis.displacement_increment
_diffrn_scan_axis.displacement_range
_diffrn_scan_axis.angle_start
_diffrn_scan_axis.angle_increment
_diffrn_scan_axis.angle_range
SCAN1 chi . . . 0.0 0 0
SCAN1 omega . . . 0.0 0.1 360.0
SCAN1 phi . . . 0.0 0 0
SCAN1 detx . . . 0.0 0 0
SCAN1 dety . . . 0.0 0 0
SCAN1 trans 287.2224260231453 0 0 . . .
==> only omega is scanned. Leave the other _axis.id out?? I don't mind if they stay in, but normally we use only one scan-axis
The construction with _diffrn_scan_axis and diifrn_scan_frame is different from the one we published (he5447) but seems OK to me.
loop
_diffrn_data_frame.id
_diffrn_data_frame.detector_element_id
_diffrn_data_frame.array_id
_diffrn_data_frame.binary_id
frm1 ELEMENT01 IMAGE01 1
frm2 ELEMENT01 IMAGE01 2
==> I have a question to @jamesrhester : _diffraction_data_frame.id should be a pointer to _array_structure.id but that data name is never given. Is that a problem?
==> Then, _diffrn_data_frame.array_id is also a pointer to _array_structure.id, so should be the same as _diffraction_data_frame.id ?
Now they are IMAGE01 and frm1 respectively.
==> I cannot find _array_data.id in the dictionary?
@jamesrhester can you please look if the construction with pointers to data is complete, not redundant and does not contain unnecessary data items
The text was updated successfully, but these errors were encountered: