From 994035c9c193838c25f3cab1af27744b385bda4b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Julian=20H=C3=B6rsch?=
 <75368027+julianhoersch@users.noreply.github.com>
Date: Tue, 28 Feb 2023 05:32:41 +0100
Subject: [PATCH] remove axes that have a value of -9999 (#56)

---
 .../imgCIF_Creator/information_extractors/extractor_utils.py    | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/Tools/imgCIF_Creator/imgCIF_Creator/information_extractors/extractor_utils.py b/Tools/imgCIF_Creator/imgCIF_Creator/information_extractors/extractor_utils.py
index c52537b..6b47b72 100644
--- a/Tools/imgCIF_Creator/imgCIF_Creator/information_extractors/extractor_utils.py
+++ b/Tools/imgCIF_Creator/imgCIF_Creator/information_extractors/extractor_utils.py
@@ -39,6 +39,8 @@ def prune_scan_info(scan_info, prune_always_axes=False):
         condition = axis not in keep_this and np.isclose(inital_val, 0, atol=0.001)
         if not prune_always_axes:
             condition = condition and axis not in imgcif_creator.ALWAYS_AXES
+        if inital_val == -9999:
+            condition = True
 
         if condition:
             for scan in scan_info: