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main.nf
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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
/*
========================================================================================
VALIDATE & PRINT PARAMETER SUMMARY
========================================================================================
*/
// Under construction
WorkflowMain.initialise(workflow, params, log)
/*
========================================================================================
IMPORT MAIN LOCAL MODULES/SUBWORKFLOWS
========================================================================================
*/
include {
TEST_WORKFLOW
} from './workflows/main'
/*
========================================================================================
RUN MAIN WORKFLOW
========================================================================================
*/
// Info required for completion email and summary
def multiqc_report = []
//
// WORKFLOW: Execute the named workflow for the pipeline
//
workflow {
// Execute main workflow
TEST_WORKFLOW()
}
/*
========================================================================================
COMPLETION EMAIL AND SUMMARY
========================================================================================
*/
// workflow.onComplete {
// if (params.email || params.email_on_fail) {
// NfcoreTemplate.email(workflow, params, summary_params, projectDir, log, multiqc_report)
// }
// NfcoreTemplate.summary(workflow, params, log)
// if (params.hook_url) {
// NfcoreTemplate.IM_notification(workflow, params, summary_params, projectDir, log)
// }
// }
/*
========================================================================================
THE END
========================================================================================
*/