Skip to content

Latest commit

 

History

History
61 lines (38 loc) · 1.14 KB

changelog.md

File metadata and controls

61 lines (38 loc) · 1.14 KB

1.2

DATE: 2024_12

Highlights

  • PDMTableMaker is executed using Experiment column.

  • The 'FreqProcessor' has been added.

Changes in detail

  • PDMTableMaker is executed using Experiment column.

  • The 'FreqProcessor' has been added to replace the old 'PGM_Processor' program. It extracts the PGM and PDM frequencies.

1.1

DATE: 2024_11

Highlights

  • Fix a bug: Local FDR calculation for orphan PSMs

Changes in detail

  • PeakFDRer: Fixing a bug. The Local FDR calculation for orphan PSMs.

1.0

DATE: 2024_11

Highlights

  • The term 'Experiment' has been replaced with 'Batch' throughout the workflow.

  • All programs now utilize a unified configuration file.

  • A revamped file structure has been introduced.

Changes in detail

  • PeakFDRer: use an updated 'experimental_table' that includes the columns 'Experiment','Batch' and 'Spectrum_File'. The FDR calculation is based on the information in the 'Batch' column.

0.X

DATE: 2024_XX

Highlights

  • Incorporated the previous source code from SHIFTS and PTM-Solver.