README.md

visual-stimulation

Analysis for experiments with visual stimulation e.g. drifting gratings.

Dependencies

• python >=3.5
• numpy
• scipy
• matplotlib
• seaborn
• pytest
• elephant
• neo
• quantities
• exdir
• expipe (needed in getting_started_tutorial.ipynb)

Examples

• A getting started tutorial can be found here: getting_started_tutorial.ipynb

• Other examples

Developers

• analysis.py: contains different analysis functions (e.g. compute_dsi)
• data_processing.py: contains functions for organizing ànd getting data (e.g. create trials)
• helper.py: contains helper functions.
• axona_helper.py: extracts stimulus data from axona specific files. A similar function to generate_stim_group_and_epoch() should be implemented if other setups are used.
• utils.py: utility functions.