Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Conda fix, schema update, config update #232

Open
wants to merge 11 commits into
base: dev
Choose a base branch
from
Open

Conda fix, schema update, config update #232

wants to merge 11 commits into from

Conversation

RamiyapriyaS
Copy link
Collaborator

Description

  • Updated config files to reflect current parameters
  • Added parameter validation through an nf-core plugin
  • Added a nextflow_schema.json file
  • Fixed issues with conda implementation

General Checks

  • Have you run appropriate tests (unit/integration/end-to-end) to check logic across run environments (Conda/Docker/Singularity on Scicomp/AWS/NF Tower/Local)?

@RamiyapriyaS RamiyapriyaS changed the title Rjd0 testing Conda fix, schema update, config update Dec 12, 2024
This was linked to issues Dec 12, 2024
Bug: Discrepancies in nextflow.config and test.config Files #226
Open
[Internal] [Bug] Conda environment on scicomp: RepeatMasker::createLib(): Error #216
Open
[Internal] [Bug] Conda on Scicomp: Issue with cache clearing #224
Open
[Internal] [Feature] Migrate to nf-core params validation #143
Open
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@yeshtables yeshtables Awaiting requested review from yeshtables

@jessicarowell jessicarowell Awaiting requested review from jessicarowell

At least 1 approving review is required to merge this pull request.

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
1 participant
@RamiyapriyaS