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Releases: CDCgov/phdi

v1.1.5

05 Dec 22:34
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Release Notes

  • Add logging for link.py, dal.py, and mpi.py and optimize MPI inserts (#962)
  • Check to see if container is running & if image exists before building in local-dev.sh (#956)
  • [bug fix] fix eCR zip file requiring xml to be in a folder (#954)

v1.1.4

28 Nov 23:35
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  • Bump cryptography from 41.0.4 to 41.0.6 (#952)
  • Adding harmonization datetime function to fhir-converter container (#949)
  • change /generate-html file parameter type to json (#938)
  • Update download_object() method to return bytes if encoding is set to None (#927)
  • End websocket with final message (#923)

v1.1.3

13 Nov 20:34
78e1dc4
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Release Notes

  • change datetime import to be compatible with other imports (#925)
  • Fix parsing for latitude and longitude (#924)
  • Bump pyarrow from 12.0.1 to 14.0.1 (#921)
  • Don't add person key to Patient resource (#920)
  • Cache external source ids (#919)
  • comment out breaking line (#918)

v1.1.2

08 Nov 16:43
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Release Notes

  • Update rl container phdi dependency path (#916)
  • Correct person_id handling (#915)
  • Fix DAL session management to support connection pooling (#911)
  • Implement connection pooling (#908)
  • Select person id from patient table (#896)
  • Add MPI Indexes to Improve Performance (#895)
  • fix for orchestration docs (#893)

v1.1.1

27 Oct 14:09
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v1.1.0

26 Oct 11:58
6fa5347
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Release Notes

  • point requirements.txt to install phdi @ main (#888)
  • Added an additional observation that contains quant. values for testing (#874)
  • Update integration tests to run at the current commit in CI (#871)
  • Check that RR isn't already present before attempting to merge with eICR (#870)
  • Revert "Check for RR field presence before merging RR to eCR" (#868)
  • Check for RR field presence before merging RR to eCR (#866)
  • Mock the Census API for tests so that Actions doesn't actually hit the API when running tests (#864)
  • Update pull request template to include notification checkbox (#863)
  • Add helper function in link.py to convert datetime objects to str (#858)
  • Add testing section to SeCRET user story template (#854)
  • Bump urllib3 from 1.26.11 to 1.26.17 in /containers/fhir-converter (#850)
  • Separate the DAL and MPI functionality - Add new DDL for multi-table schema for MPI (#828)

v1.0.14

11 Oct 21:13
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Release Notes

  • Make secondary_schema optional (#859)
  • 834 message parser meta data (#853)
  • Bump pillow from 10.0.0 to 10.0.1 (#852)
  • Bump urllib3 from 1.26.16 to 1.26.17 (#851)
  • Add exception handling for XML parsing to FHIR Converter (#839)
  • Add RR extraction to validation service (#831)
  • Orchestration service happy path (#829)

v1.0.13

27 Sep 21:07
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Release Notes

  • Add postgres service to container doc generation job (#842)
  • Added code to handle floats properly when making a list in the message parser (#841)
  • Bump cryptography from 41.0.3 to 41.0.4 (#835)

v1.0.12

26 Sep 19:04
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Release Notes

  • Fix record linkage bug related to empty lists returned within a block (#837)
  • Updated message parser to handle nulls and then provided sample file (#830)
  • Create integration test for the FHIR converter (#826)
  • Update geocoding census test (#825)
  • Implement pyway to mange MPI migrations (#824)
  • Add RR extraction logic, phdi dependency to FHIR converter (#814)
  • Bump cryptography from 41.0.2 to 41.0.3 (#811)
  • Bump certifi from 2023.5.7 to 2023.7.22 (#810)
  • Add RR extraction to PHDI SDK (#800)
  • Refactor fhir converter container to use multiple files (#799)
  • Fix eicr id in FHIR Converter and in ECR Datastore - add additional identifier fields (#795)
  • stubbed orchestration service (#794)

v1.0.11

18 Aug 17:34
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Release Notes

  • Add conversion helper functions (#777)
  • Add additional demographic data into ecr store schema (#776)
  • Add support for nest data to the message parser to handle many to one relationships within healthcare messages (#774)