Adding action to post artifact

.github/workflows/pkgdown.yaml

@@ -21,6 +21,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     permissions:
       contents: write
+      pull-requests: write
     steps:
       - uses: actions/checkout@v4
 
@@ -39,6 +40,21 @@ jobs:
         run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
         shell: Rscript {0}
 
+      - name: Save artifact
+        if: ${{ github.event_name == 'pull_request' }}
+        uses: actions/upload-artifact@v4
+        with:
+          name: pkgdown-site
+          path: ./docs
+          retention-days: 7
+
+      - name: Post to PR
+        uses: CDCgov/cfa-actions/[email protected]
+        if: ${{ github.event_name == 'pull_request' }}
+        with:
+          artifact-name: pkgdown-site
+          gh-token: ${{ secrets.GITHUB_TOKEN }}
+
       - name: Deploy to GitHub pages 🚀
         if: github.event_name != 'pull_request'
         uses: JamesIves/[email protected]

NEWS.md

@@ -1,5 +1,6 @@
 # CFAEpiNow2Pipeline (development version)
 
+* Adding new action to post a comment on PRs with a link to the rendered pkgdown site.
 * Re-organizing GitHub workflows.
 * Checks if batch pool exists. Pools are named after branches. Also allows for deletion via commit message.
 * Merges workflows 1 and 2 into a single workflow.

README.md

@@ -64,7 +64,7 @@ In this workflow, task IDs correspond to location specific model runs (which are
 │   ├── job_metadata.json
 ```
 
-`<output>/`: The base output directory. This could, for example, be `/` in a Docker container or dedicated output directory.
+- `<output>/`: The base output directory. This could, for example, be `/` in a Docker container or dedicated output directory.
 - `job_<job_id>/`: A directory named after the specific job identifier, containing all outputs related to that job. All tasks within a job share this same top-level directory.
   - `raw_samples/`: A subdirectory within each job folder that holds the raw sample files from all tasks in the job. Task-specific *draws* output files all live together in this directory to enable easy globbing over task-partitioned outputs.
     - `samples_<task_id>.parquet`: A file containing raw samples from the model, associated with a particular task identifier. This file has columns `job_id`, `task_id`, `geo_value`, `disease`, `model`, `_draw`, `_chain`, `_iteration`, `_variable`, `value`, and `reference_date`. These variables follow the [{tidybayes}](https://mjskay.github.io/tidybayes/articles/tidybayes.html) specification.