diff --git a/common/ccbr_ucsc/Dockerfile b/common/ccbr_ucsc/Dockerfile new file mode 100644 index 0000000..beb273f --- /dev/null +++ b/common/ccbr_ucsc/Dockerfile @@ -0,0 +1,23 @@ +FROM nciccbr/ccbr_ubuntu_base_20.04:v6 + +# build time variables +ARG BUILD_DATE="000000" +ENV BUILD_DATE=${BUILD_DATE} +ARG BUILD_TAG="000000" +ENV BUILD_TAG=${BUILD_TAG} +ARG REPONAME="000000" +ENV REPONAME=${REPONAME} + +# insert your layers here +RUN mamba install -c bioconda \ + ucsc-bedsort + + +# Save Dockerfile in the docker +COPY Dockerfile /opt2/Dockerfile_${REPONAME}.${BUILD_TAG} +RUN chmod a+r /opt2/Dockerfile_${REPONAME}.${BUILD_TAG} + +# cleanup +WORKDIR /data2 +RUN apt-get clean && apt-get purge \ + && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*