From b14ad6292c572dcf6bcb8df3b1895582da3d1d98 Mon Sep 17 00:00:00 2001
From: Kelly Sovacool <kelly.sovacool@nih.gov>
Date: Tue, 19 Sep 2023 11:21:27 -0400
Subject: [PATCH] fix: include containers config in main config after profiles

---
 nextflow.config | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/nextflow.config b/nextflow.config
index 5ddce2a..248b85d 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -71,6 +71,8 @@ profiles {
     }
 }
 
+includeConfig 'conf/containers.config'
+
 // Export these variables to prevent local Python/R libraries from conflicting with those in the container
 // The JULIA depot path has been adjusted to a fixed path `/usr/local/share/julia` that needs to be used for packages in the container.
 // See https://apeltzer.github.io/post/03-julia-lang-nextflow/ for details on that. Once we have a common agreement on where to keep Julia packages, this is adjustable.