From a4a5a8366bc60e9727c9c0bc84e3c8ee8b3cc35a Mon Sep 17 00:00:00 2001
From: Kelly Sovacool <kelly.sovacool@nih.gov>
Date: Mon, 11 Sep 2023 11:17:27 -0400
Subject: [PATCH] fix: symlink results to save disk space

---
 nextflow.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nextflow.config b/nextflow.config
index 46c5e024..778ddc0a 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -6,7 +6,7 @@ params {
     genome = null
     seq_center = null
     enable_conda = false
-    publish_dir_mode = "copy"
+    publish_dir_mode = "symlink"
     max_memory = '224 GB'
     max_cpus = 32
     max_time = '72 h'