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modules.json
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modules.json
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{
"name": "CCBR/CHAMPAGNE",
"homePage": "https://github.com/CCBR/CHAMPAGNE",
"repos": {
"https://github.com/CCBR/nf-modules": {
"modules": {
"CCBR": {
"bedtools/merge": {
"branch": "main",
"git_sha": "b21c6984c111bb70c058f3ab5e8aad25d652521b",
"installed_by": ["consensus_peaks"]
},
"bwa/index": {
"branch": "main",
"git_sha": "a4830988cb507ff060bf45fbac2e81f72413ab53",
"installed_by": ["modules"]
},
"bwa/mem": {
"branch": "main",
"git_sha": "7887b0e0dc5a0320d8ba84c2763ef8692c358087",
"installed_by": ["modules", "filter_blacklist"]
},
"cat/cat": {
"branch": "main",
"git_sha": "8e65ce177604677b44bf29227e81c1e481ebeaf3",
"installed_by": ["consensus_peaks"]
},
"custom/countfastq": {
"branch": "main",
"git_sha": "2ccd43e3734de30fe61ed0ff80e6e3252929505e",
"installed_by": ["filter_blacklist"]
},
"custom/formatmergedbed": {
"branch": "main",
"git_sha": "d70a54308963bdbf4873ca988576ba5119062e0d",
"installed_by": ["consensus_peaks"]
},
"custom/normalizepeaks": {
"branch": "main",
"git_sha": "e9a1ba91cb24fe36f83ce5b5f7312cfb689adbd6",
"installed_by": ["consensus_peaks"]
},
"cutadapt": {
"branch": "main",
"git_sha": "a3525c765b76400269695235bbf164a948604c4a",
"installed_by": ["modules"]
},
"khmer/uniquekmers": {
"branch": "khmer",
"git_sha": "b5b4ba5c89b8a6d5fe117183d198616352fa465a",
"installed_by": ["modules"]
},
"picard/samtofastq": {
"branch": "main",
"git_sha": "25e6e67a4ec172db1bbb0ef995c4a470d847143a",
"installed_by": ["filter_blacklist"]
},
"samtools/filteraligned": {
"branch": "main",
"git_sha": "879e969c593ab9f321301ac15722728ab30cea49",
"installed_by": ["filter_blacklist"]
},
"samtools/flagstat": {
"branch": "main",
"git_sha": "25e6e67a4ec172db1bbb0ef995c4a470d847143a",
"installed_by": ["modules"]
},
"samtools/sort": {
"branch": "main",
"git_sha": "5b39869abfc740c6243d18a3cd84aa7d78787125",
"installed_by": ["modules"]
},
"sort/bed": {
"branch": "main",
"git_sha": "813b663771fc853edd335bcc7b9753da78195270",
"installed_by": ["consensus_peaks"]
}
}
},
"subworkflows": {
"CCBR": {
"consensus_peaks": {
"branch": "main",
"git_sha": "9bc99b53a2d22099a7f9da1b394771d2d13872a6",
"installed_by": ["subworkflows"]
},
"filter_blacklist": {
"branch": "main",
"git_sha": "b7764378fac18bea8c84f9dd39cb595241b6e796",
"installed_by": ["subworkflows"]
}
}
}
},
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bedtools/getfasta": {
"branch": "master",
"git_sha": "8fc1d24c710ebe1d5de0f2447ec9439fd3d9d66a",
"installed_by": ["modules"]
},
"custom/sratoolsncbisettings": {
"branch": "master",
"git_sha": "20e78a9868eaa69c8cac91152397def32374b807",
"installed_by": [
"fastq_download_prefetch_fasterqdump_sratools"
]
},
"rmarkdownnotebook": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"],
"patch": "modules/nf-core/rmarkdownnotebook/rmarkdownnotebook.diff"
},
"sratools/fasterqdump": {
"branch": "master",
"git_sha": "20e78a9868eaa69c8cac91152397def32374b807",
"installed_by": [
"fastq_download_prefetch_fasterqdump_sratools"
]
},
"sratools/prefetch": {
"branch": "master",
"git_sha": "20e78a9868eaa69c8cac91152397def32374b807",
"installed_by": [
"fastq_download_prefetch_fasterqdump_sratools"
]
}
}
},
"subworkflows": {
"nf-core": {
"fastq_download_prefetch_fasterqdump_sratools": {
"branch": "master",
"git_sha": "bdfd7bc8d2e5a93531e14bd94c4128d9a72a2435",
"installed_by": ["subworkflows"]
}
}
}
}
}
}