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Glob argument for nextflow #20

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dnousome opened this issue Dec 19, 2023 · 0 comments
Open

Glob argument for nextflow #20

dnousome opened this issue Dec 19, 2023 · 0 comments
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@dnousome
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Description of the bug

Globbing doesn't appear to pass correctly through to final nextflow
For example:
pipeline run --input "*.fastq.gz"
should produce
nextflow run pipeline.nf--input "*.fastq.gz"
But shows
nextflow run pipeline.nf--input *.fastq.gz

Command used and terminal output

pipelinename run --input "*.fastq.gz"

Relevant files

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@dnousome dnousome added the bug Something isn't working label Dec 19, 2023
@kelly-sovacool kelly-sovacool self-assigned this Dec 19, 2023
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