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Globbing doesn't appear to pass correctly through to final nextflow
For example: pipeline run --input "*.fastq.gz"
should produce nextflow run pipeline.nf--input "*.fastq.gz"
But shows nextflow run pipeline.nf--input *.fastq.gz
Command used and terminal output
pipelinename run --input "*.fastq.gz"
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered:
Description of the bug
Globbing doesn't appear to pass correctly through to final nextflow
For example:
pipeline run --input "*.fastq.gz"
should produce
nextflow run pipeline.nf--input "*.fastq.gz"
But shows
nextflow run pipeline.nf--input *.fastq.gz
Command used and terminal output
pipelinename run --input "*.fastq.gz"
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered: