README.md

PredCRD

Predict Continuous Representation of Disease

Introduction

The pipeline aims to combine knowledge distillation (KD) methods for disease subtyping and representation methods.

Supported Pipelines

Installation

git clone https://github.com/CBICA/PredCRD.git
cd PredCRD/
pip install -e .

DLMUSE ROI volumes to SurrealGAN R-indices pipeline:

EXAMPLE USAGE:
    PredCRD  -i           /path/to/input.csv
             -o           /path/to/output.csv
             -d           *Optional cuda/cpu
             -m           *Optional /path/to/model.pth
             -s           *Optional /path/to/scalar.bin
             -mt          *Optional /path/to/mean_icv.npy

*note: default model.pth, scalar.bin, and mean_icv.npy are included in model/ folder