diff --git a/src/Image_Processing/DTI/qsiprep b/src/Image_Processing/DTI/qsiprep index aa43d3b0..8802df40 160000 --- a/src/Image_Processing/DTI/qsiprep +++ b/src/Image_Processing/DTI/qsiprep @@ -1 +1 @@ -Subproject commit aa43d3b0aca0c8bf91d7e67c819fbf16bd6b819e +Subproject commit 8802df406b4dc15c720e78750cc7b457fa97c8ab diff --git a/src/Image_Processing/fMRI/fmriprep b/src/Image_Processing/fMRI/fmriprep index 6c61481e..73189de5 160000 --- a/src/Image_Processing/fMRI/fmriprep +++ b/src/Image_Processing/fMRI/fmriprep @@ -1 +1 @@ -Subproject commit 6c61481e044116a06488fe43871fe4f6b1de6cf5 +Subproject commit 73189de5ee576ffc73ab432b7419304d44ce5776 diff --git a/src/Image_Processing/fMRI/xcp_d b/src/Image_Processing/fMRI/xcp_d index 3ba1a93c..b1601835 160000 --- a/src/Image_Processing/fMRI/xcp_d +++ b/src/Image_Processing/fMRI/xcp_d @@ -1 +1 @@ -Subproject commit 3ba1a93c008fb15720d166da8ad12ec4046be562 +Subproject commit b16018353448b1ff6cddf4ae1508bbe6b521ff11 diff --git a/src/Image_Processing/sMRI/DLICV b/src/Image_Processing/sMRI/DLICV index 66d3b2d0..7e20b7d9 160000 --- a/src/Image_Processing/sMRI/DLICV +++ b/src/Image_Processing/sMRI/DLICV @@ -1 +1 @@ -Subproject commit 66d3b2d0553334fa187fdfba0cf16b9b01860b6a +Subproject commit 7e20b7d9e285f7d604b4fd55d64ce09549a32357 diff --git a/src/Image_Processing/sMRI/DLMUSE b/src/Image_Processing/sMRI/DLMUSE index 940aa1d6..c954e506 160000 --- a/src/Image_Processing/sMRI/DLMUSE +++ b/src/Image_Processing/sMRI/DLMUSE @@ -1 +1 @@ -Subproject commit 940aa1d68eb7afd81ec5877994db4fbe20534226 +Subproject commit c954e506cc202c7d613f8377d5a2dd8c0acb2d71 diff --git a/src/Machine_Learning/spare_score b/src/Machine_Learning/spare_score index d22e18a2..00e12d67 160000 --- a/src/Machine_Learning/spare_score +++ b/src/Machine_Learning/spare_score @@ -1 +1 @@ -Subproject commit d22e18a29794f90e10971b5fd8aad016c40b6ef7 +Subproject commit 00e12d67a56ff30c4590644a3f4e67c5a98982ac diff --git a/src/viewer/pages/plot_sMRI_vars_study.py b/src/viewer/pages/plot_sMRI_vars_study.py index 3c321bb2..afb7cbf7 100644 --- a/src/viewer/pages/plot_sMRI_vars_study.py +++ b/src/viewer/pages/plot_sMRI_vars_study.py @@ -361,13 +361,14 @@ def show_img() -> None: for i, tmp_orient in enumerate(list_orient): with blocks[i]: ind_view = utilni.img_views.index(tmp_orient) + size_auto = True if not st.session_state.mriview_var["show_overlay"]: utilst.show_img3D( - img, ind_view, mask_bounds[ind_view, :], tmp_orient + img, ind_view, mask_bounds[ind_view, :], tmp_orient, size_auto ) else: utilst.show_img3D( - img_masked, ind_view, mask_bounds[ind_view, :], tmp_orient + img_masked, ind_view, mask_bounds[ind_view, :], tmp_orient, size_auto ) diff --git a/src/viewer/pages/process_sMRI_DLMUSE.py b/src/viewer/pages/process_sMRI_DLMUSE.py index a72ced95..81c15cde 100644 --- a/src/viewer/pages/process_sMRI_DLMUSE.py +++ b/src/viewer/pages/process_sMRI_DLMUSE.py @@ -329,7 +329,7 @@ def panel_view() -> None: ind_view, mask_bounds[ind_view, :], tmp_orient, - size_auto = True + size_auto ) diff --git a/src/viewer/pages/process_sMRI_DLWMLS.py b/src/viewer/pages/process_sMRI_DLWMLS.py index ca563f22..82f75619 100644 --- a/src/viewer/pages/process_sMRI_DLWMLS.py +++ b/src/viewer/pages/process_sMRI_DLWMLS.py @@ -234,13 +234,14 @@ def panel_view() -> None: ): with blocks[i]: ind_view = utilni.img_views.index(tmp_orient) + size_auto = True if is_show_overlay is False: utilst.show_img3D( - img, ind_view, mask_bounds[ind_view, :], tmp_orient + img, ind_view, mask_bounds[ind_view, :], tmp_orient, size_auto ) else: utilst.show_img3D( - img_masked, ind_view, mask_bounds[ind_view, :], tmp_orient + img_masked, ind_view, mask_bounds[ind_view, :], tmp_orient, size_auto ) diff --git a/test_data/nifti/IXI_smallset/IXI012-HH-1211_T1.nii.gz b/test_data/nifti/IXI_n1/IXI012-HH-1211_T1.nii.gz similarity index 100% rename from test_data/nifti/IXI_smallset/IXI012-HH-1211_T1.nii.gz rename to test_data/nifti/IXI_n1/IXI012-HH-1211_T1.nii.gz diff --git a/test_data/nifti/IXI_n1/IXI_Demog_n1.csv b/test_data/nifti/IXI_n1/IXI_Demog_n1.csv new file mode 100644 index 00000000..eb1f33af --- /dev/null +++ b/test_data/nifti/IXI_n1/IXI_Demog_n1.csv @@ -0,0 +1,2 @@ +MRID,Age,Sex +IXI012-HH-1211,38.78,M diff --git a/test_data/nifti/IXI_smallset/IXI015-HH-1258_T1.nii.gz b/test_data/nifti/IXI_n1_irregularname/IXI015-HH-1258-series003.nii.gz similarity index 100% rename from test_data/nifti/IXI_smallset/IXI015-HH-1258_T1.nii.gz rename to test_data/nifti/IXI_n1_irregularname/IXI015-HH-1258-series003.nii.gz diff --git a/test_data/nifti/IXI_n1_irregularname/IXI_Demog_n2.csv b/test_data/nifti/IXI_n1_irregularname/IXI_Demog_n2.csv new file mode 100644 index 00000000..062289a7 --- /dev/null +++ b/test_data/nifti/IXI_n1_irregularname/IXI_Demog_n2.csv @@ -0,0 +1,2 @@ +MRID,Age,Sex +IXI015-HH-1258-series003,24.28,M diff --git a/test_data/processed/IXI_smallset/Nifti/T1/IXI012-HH-1211_T1.nii.gz b/test_data/nifti/IXI_n2/IXI012-HH-1211_T1.nii.gz similarity index 100% rename from test_data/processed/IXI_smallset/Nifti/T1/IXI012-HH-1211_T1.nii.gz rename to test_data/nifti/IXI_n2/IXI012-HH-1211_T1.nii.gz diff --git a/test_data/processed/IXI_smallset/Nifti/T1/IXI015-HH-1258_T1.nii.gz b/test_data/nifti/IXI_n2/IXI015-HH-1258_T1.nii.gz similarity index 100% rename from test_data/processed/IXI_smallset/Nifti/T1/IXI015-HH-1258_T1.nii.gz rename to test_data/nifti/IXI_n2/IXI015-HH-1258_T1.nii.gz diff --git a/test_data/nifti/IXI_Demog_n2.csv b/test_data/nifti/IXI_n2/IXI_Demog_n2.csv similarity index 100% rename from test_data/nifti/IXI_Demog_n2.csv rename to test_data/nifti/IXI_n2/IXI_Demog_n2.csv diff --git a/test_data/nifti/IXI_n2_irregularname/IXI012-HH-1211_scan1-mprage.nii.gz b/test_data/nifti/IXI_n2_irregularname/IXI012-HH-1211_scan1-mprage.nii.gz new file mode 100755 index 00000000..67842839 Binary files /dev/null and b/test_data/nifti/IXI_n2_irregularname/IXI012-HH-1211_scan1-mprage.nii.gz differ diff --git a/test_data/nifti/IXI_n2_irregularname/IXI015-HH-1258-series003.nii.gz b/test_data/nifti/IXI_n2_irregularname/IXI015-HH-1258-series003.nii.gz new file mode 100755 index 00000000..136b0794 Binary files /dev/null and b/test_data/nifti/IXI_n2_irregularname/IXI015-HH-1258-series003.nii.gz differ diff --git a/test_data/nifti/IXI_n2_irregularname/IXI_Demog_n2.csv b/test_data/nifti/IXI_n2_irregularname/IXI_Demog_n2.csv new file mode 100644 index 00000000..62871243 --- /dev/null +++ b/test_data/nifti/IXI_n2_irregularname/IXI_Demog_n2.csv @@ -0,0 +1,3 @@ +MRID,Age,Sex +IXI012-HH-1211_scan1-mprage,38.78,M +IXI015-HH-1258-series003,24.28,M diff --git a/test_data/processed/IXI_n1/DLMUSE/DLMUSE_Volumes.csv b/test_data/processed/IXI_n1/DLMUSE/DLMUSE_Volumes.csv new file mode 100644 index 00000000..e22838c1 --- /dev/null +++ b/test_data/processed/IXI_n1/DLMUSE/DLMUSE_Volumes.csv @@ -0,0 +1,2 @@ +MRID,702,701,600,601,604,606,607,613,614,501,502,503,504,505,506,507,508,509,510,511,512,513,514,515,516,517,518,519,520,521,522,523,524,525,401,402,403,404,405,406,407,408,409,410,411,412,413,414,415,416,417,418,419,420,421,422,423,424,425,426,427,428,429,430,431,432,433,434,435,436,301,302,303,304,305,306,307,308,309,310,311,312,313,314,315,316,317,318,319,320,321,322,323,324,325,326,327,328,329,330,331,332,333,334,335,336,337,338,339,340,341,342,343,344,345,4,11,23,30,31,32,35,36,37,38,39,40,41,47,48,49,50,51,52,55,56,57,58,59,60,61,62,71,72,73,75,76,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,100,101,102,103,104,105,106,107,108,109,112,113,114,115,116,117,118,119,120,121,122,123,124,125,128,129,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,160,161,162,163,164,165,166,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,190,191,192,193,194,195,196,197,198,199,200,201,202,203,204,205,206,207 +IXI012-HH-1211,1652136.0,1521560.0,129000.0,832544.0,645952.0,408792.0,319848.0,412952.0,312136.0,13968.0,174904.0,63984.0,488440.0,44456.0,165152.0,239760.0,277288.0,19192.0,81864.0,31456.0,241872.0,23208.0,83104.0,122800.0,138848.0,10344.0,82240.0,32528.0,246568.0,21248.0,82048.0,116960.0,138440.0,6016.0,18928.0,18144.0,12760.0,239080.0,249360.0,44456.0,100824.0,64328.0,117352.0,122408.0,137760.0,139528.0,9216.0,9208.0,6272.0,117128.0,124744.0,23208.0,50704.0,32400.0,58288.0,64512.0,68936.0,69912.0,9712.0,8936.0,6488.0,121952.0,124616.0,21248.0,50120.0,31928.0,59064.0,57896.0,68824.0,69616.0,26144.0,14016.0,133720.0,46496.0,18704.0,30632.0,13824.0,11248.0,47032.0,42544.0,88552.0,28800.0,18768.0,107680.0,11312.0,13112.0,6840.0,65088.0,22520.0,9568.0,16424.0,6784.0,5808.0,24120.0,20776.0,43440.0,14848.0,9984.0,53016.0,5936.0,13032.0,7176.0,68632.0,23976.0,9136.0,14208.0,7040.0,5440.0,22912.0,21768.0,45112.0,13952.0,8784.0,54664.0,5376.0,1472.0,1360.0,416.0,432.0,1144.0,1176.0,23872.0,3144.0,2840.0,65704.0,65344.0,16536.0,16520.0,5448.0,4856.0,216.0,200.0,5800.0,10144.0,1632.0,1600.0,4520.0,4344.0,8936.0,9208.0,5056.0,5488.0,5072.0,1992.0,3736.0,728.0,800.0,124616.0,124744.0,31928.0,32400.0,57896.0,64512.0,69616.0,69912.0,456.0,640.0,3712.0,3272.0,2320.0,2360.0,13968.0,4808.0,6280.0,4640.0,4424.0,2248.0,1736.0,11560.0,9552.0,4128.0,4568.0,4968.0,4600.0,7000.0,6568.0,2808.0,2744.0,2016.0,2008.0,3664.0,3904.0,8784.0,9984.0,2656.0,2864.0,7936.0,9152.0,15816.0,14520.0,10640.0,9640.0,2344.0,2584.0,5192.0,5728.0,2688.0,2272.0,23272.0,23048.0,6576.0,7360.0,5080.0,5672.0,712.0,864.0,3176.0,3600.0,7952.0,5760.0,17696.0,18152.0,4352.0,4464.0,5440.0,5808.0,3712.0,3896.0,1888.0,1840.0,4208.0,4416.0,13240.0,13984.0,4232.0,4040.0,2536.0,2416.0,2152.0,2960.0,13336.0,13640.0,3360.0,3120.0,1880.0,2128.0,14328.0,13472.0,1832.0,1984.0,1592.0,1832.0,18336.0,15496.0,5912.0,6192.0,10912.0,10312.0,4048.0,3144.0,9304.0,9936.0,8832.0,8928.0,12320.0,11416.0,3432.0,3432.0,1664.0,1824.0 diff --git a/test_data/processed/IXI_smallset/DLMUSE/IXI012-HH-1211_T1_DLMUSE.nii.gz b/test_data/processed/IXI_n1/DLMUSE/IXI012-HH-1211_T1_DLMUSE.nii.gz similarity index 100% rename from test_data/processed/IXI_smallset/DLMUSE/IXI012-HH-1211_T1_DLMUSE.nii.gz rename to test_data/processed/IXI_n1/DLMUSE/IXI012-HH-1211_T1_DLMUSE.nii.gz diff --git a/test_data/processed/IXI_smallset/MLScores/DLMUSE+MLScores.csv b/test_data/processed/IXI_n1/MLScores/DLMUSE+MLScores.csv similarity index 100% rename from test_data/processed/IXI_smallset/MLScores/DLMUSE+MLScores.csv rename to test_data/processed/IXI_n1/MLScores/DLMUSE+MLScores.csv diff --git a/test_data/processed/IXI_n1/Nifti/T1/IXI012-HH-1211_T1.nii.gz b/test_data/processed/IXI_n1/Nifti/T1/IXI012-HH-1211_T1.nii.gz new file mode 100755 index 00000000..67842839 Binary files /dev/null and b/test_data/processed/IXI_n1/Nifti/T1/IXI012-HH-1211_T1.nii.gz differ diff --git a/test_data/processed/IXI_n1/lists/Demog.csv b/test_data/processed/IXI_n1/lists/Demog.csv new file mode 100644 index 00000000..eb1f33af --- /dev/null +++ b/test_data/processed/IXI_n1/lists/Demog.csv @@ -0,0 +1,2 @@ +MRID,Age,Sex +IXI012-HH-1211,38.78,M diff --git a/test_data/processed/IXI_smallset/DLMUSE/DLMUSE_Volumes.csv b/test_data/processed/IXI_n2/DLMUSE/DLMUSE_Volumes.csv similarity index 100% rename from test_data/processed/IXI_smallset/DLMUSE/DLMUSE_Volumes.csv rename to test_data/processed/IXI_n2/DLMUSE/DLMUSE_Volumes.csv diff --git a/test_data/processed/IXI_n2/DLMUSE/IXI012-HH-1211_T1_DLMUSE.nii.gz b/test_data/processed/IXI_n2/DLMUSE/IXI012-HH-1211_T1_DLMUSE.nii.gz new file mode 100644 index 00000000..08a796a7 Binary files /dev/null and b/test_data/processed/IXI_n2/DLMUSE/IXI012-HH-1211_T1_DLMUSE.nii.gz differ diff --git a/test_data/processed/IXI_smallset/DLMUSE/IXI015-HH-1258_T1_DLMUSE.nii.gz b/test_data/processed/IXI_n2/DLMUSE/IXI015-HH-1258_T1_DLMUSE.nii.gz similarity index 100% rename from test_data/processed/IXI_smallset/DLMUSE/IXI015-HH-1258_T1_DLMUSE.nii.gz rename to test_data/processed/IXI_n2/DLMUSE/IXI015-HH-1258_T1_DLMUSE.nii.gz diff --git a/test_data/processed/IXI_n2/MLScores/DLMUSE+MLScores.csv b/test_data/processed/IXI_n2/MLScores/DLMUSE+MLScores.csv new file mode 100644 index 00000000..2aac6eb1 --- /dev/null +++ b/test_data/processed/IXI_n2/MLScores/DLMUSE+MLScores.csv @@ -0,0 +1,3 @@ +MRID,Age,Sex,ICV,TotalBrain,CortCSF,GM,WM,GM_L,WM_L,GM_R,WM_R,CorpusCallosum,Cerebellum,Deep_WM_GM,Frontal,Limbic,Occipital,Parietal,Temporal,Ventricles,Cerebellum_L,Deep_WM_GM_L,Frontal_L,Limbic_L,Occipital_L,Parietal_L,Temporal_L,Ventricle_L,Cerebellum_R,Deep_WM_GM_R,Frontal_R,Limbic_R,Occipital_R,Parietal_R,Temporal_R,Ventricle_R,BasalGanglia,Deep_GM,Deep_WM,Frontal_GM,Frontal_WM,Limbic_GM,Occipital_GM,Occipital_WM,Parietal_GM,Parietal_WM,Temporal_GM,Temporal_WM,BasalGanglia_L,Deep_GM_L,Deep_WM_L,Frontal_GM_L,Frontal_WM_L,Limbic_GM_L,Occipital_GM_L,Occipital_WM_L,Parietal_GM_L,Parietal_WM_L,Temporal_GM_L,Temporal_WM_L,BasalGanglia_R,Deep_GM_R,Deep_WM_R,Frontal_GM_R,Frontal_WM_R,Limbic_GM_R,Occipital_GM_R,Occipital_WM_R,Parietal_GM_R,Parietal_WM_R,Temporal_GM_R,Temporal_WM_R,FrontalInferior_GM,FrontalInsular_GM,FrontalLateral_GM,FrontalMedial_GM,FrontalOpercular_GM,LimbicCingulate_GM,LimbicMedialTemporal_GM,OccipitalInferior_GM,OccipitalLateral_GM,OccipitalMedial_GM,ParietalLateral_GM,ParietalMedial_GM,TemporalInferior_GM,TemporalLateral_GM,TemporalSupraTemporal_GM,FrontalInferior_GM_L,FrontalInsular_GM_L,FrontalLateral_GM_L,FrontalMedial_GM_L,FrontalOpercular_GM_L,LimbicCingulate_GM_L,LimbicMedialTemporal_GM_L,OccipitalInferior_GM_L,OccipitalLateral_GM_L,OccipitalMedial_GM_L,ParietalLateral_GM_L,ParietalMedial_GM_L,TemporalInferior_GM_L,TemporalLateral_GM_L,TemporalSupraTemporal_GM_L,FrontalInferior_GM_R,FrontalInsular_GM_R,FrontalLateral_GM_R,FrontalMedial_GM_R,FrontalOpercular_GM_R,LimbicCingulate_GM_R,LimbicMedialTemporal_GM_R,OccipitalInferior_GM_R,OccipitalLateral_GM_R,OccipitalMedial_GM_R,ParietalLateral_GM_R,ParietalMedial_GM_R,TemporalInferior_GM_R,TemporalLateral_GM_R,TemporalSupraTemporal_GM_R,3rdVentricle,4thVentricle,AccumbensArea_R,AccumbensArea_L,Amygdala_R,Amygdala_L,BrainStem,Caudate_R,Caudate_L,CerebellumExterior_R,CerebellumExterior_L,Cerebellum_WM_R,Cerebellum_WM_L,Hippocampus_R,Hippocampus_L,InfLatVentricle_R,InfLatVentricle_L,LateralVentricle_R,LateralVentricle_L,Pallidum_R,Pallidum_L,Putamen_R,Putamen_L,ThalamusProper_R,ThalamusProper_L,VentralDC_R,VentralDC_L,CerebellarVermalLobules_1to5,CerebellarVermalLobules_6to7,CerebellarVermalLobules_8to10,BasalForebrain_L,BasalForebrain_R,Fornix_R,Fornix_L,AnteriorLimbInternalCapsule_R,AnteriorLimbInternalCapsule_L,PosteriorLimbInternalCapsuleIncCerebralPeduncle_R,PosteriorLimbInternalCapsuleIncCerebralPeduncle_L,AnteriorCingulateGyrus_R,AnteriorCingulateGyrus_L,AnteriorInsula_R,AnteriorInsula_L,AnteriorOrbitalGyrus_R,AnteriorOrbitalGyrus_L,AngularGyrus_R,AngularGyrus_L,CalcarineCortex_R,CalcarineCortex_L,CentralOperculum_R,CentralOperculum_L,Cuneus_R,Cuneus_L,EntorhinalArea_R,EntorhinalArea_L,FrontalOperculum_R,FrontalOperculum_L,FrontalPole_R,FrontalPole_L,FusiformGyrus_R,FusiformGyrus_L,GyrusRectus_R,GyrusRectus_L,InferiorOccipitalGyrus_R,InferiorOccipitalGyrus_L,InferiorTemporalGyrus_R,InferiorTemporalGyrus_L,LingualGyrus_R,LingualGyrus_L,LateralOrbitalGyrus_R,LateralOrbitalGyrus_L,MiddleCingulateGyrus_R,MiddleCingulateGyrus_L,MedialFrontalCortex_R,MedialFrontalCortex_L,MiddleFrontalGyrus_R,MiddleFrontalGyrus_L,MiddleOccipitalGyrus_R,MiddleOccipitalGyrus_L,MedialOrbitalGyrus_R,MedialOrbitalGyrus_L,PostcentralGyrusMedialSegment_R,PostcentralGyrusMedialSegment_L,PrecentralGyrusMedialSegment_R,PrecentralGyrusMedialSegment_L,SuperiorFrontalGyrusMedialSegment_R,SuperiorFrontalGyrusMedialSegment_L,MiddleTemporalGyrus_R,MiddleTemporalGyrus_L,OccipitalPole_R,OccipitalPole_L,OccipitalFusiformGyrus_R,OccipitalFusiformGyrus_L,OpercularPartInferiorFrontalGyrus_R,OpercularPartInferiorFrontalGyrus_L,OrbitalPartInferiorFrontalGyrus_R,OrbitalPartInferiorFrontalGyrus_L,PosteriorCingulateGyrus_R,PosteriorCingulateGyrus_L,Precuneus_R,Precuneus_L,ParahippocampalGyrus_R,ParahippocampalGyrus_L,PosteriorInsula_R,PosteriorInsula_L,ParietalOperculum_R,ParietalOperculum_L,PostcentralGyrus_R,PostcentralGyrus_L,PosteriorOrbitalGyrus_R,PosteriorOrbitalGyrus_L,PlanumPolare_R,PlanumPolare_L,PrecentralGyrus_R,PrecentralGyrus_L,PlanumTemporale_R,PlanumTemporale_L,SubcallosalArea_R,SubcallosalArea_L,SuperiorFrontalGyrus_R,SuperiorFrontalGyrus_L,SupplementaryMotorCortex_R,SupplementaryMotorCortex_L,SupramarginalGyrus_R,SupramarginalGyrus_L,SuperiorOccipitalGyrus_R,SuperiorOccipitalGyrus_L,Superior_parietalLobule_R,Superior_parietalLobule_L,SuperiorTemporalGyrus_R,SuperiorTemporalGyrus_L,TemporalPole_R,TemporalPole_L,TriangularPartInferiorFrontalGyrus_R,TriangularPartInferiorFrontalGyrus_L,TransverseTemporalGyrus_R,TransverseTemporalGyrus_L,TotalBrain_centiles,GM_centiles,WM_centiles,GM_L_centiles,WM_L_centiles,GM_R_centiles,WM_R_centiles,Cerebellum_centiles,Deep_WM_GM_centiles,Frontal_centiles,Limbic_centiles,Occipital_centiles,Parietal_centiles,Temporal_centiles,Ventricles_centiles,Cerebellum_L_centiles,Deep_WM_GM_L_centiles,Frontal_L_centiles,Limbic_L_centiles,Occipital_L_centiles,Parietal_L_centiles,Temporal_L_centiles,Ventricle_L_centiles,Cerebellum_R_centiles,Deep_W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ntalGyrus_L_centiles,OrbitalPartInferiorFrontalGyrus_R_centiles,OrbitalPartInferiorFrontalGyrus_L_centiles,PosteriorCingulateGyrus_R_centiles,PosteriorCingulateGyrus_L_centiles,Precuneus_R_centiles,Precuneus_L_centiles,ParahippocampalGyrus_R_centiles,ParahippocampalGyrus_L_centiles,PosteriorInsula_R_centiles,PosteriorInsula_L_centiles,ParietalOperculum_R_centiles,ParietalOperculum_L_centiles,PostcentralGyrus_R_centiles,PostcentralGyrus_L_centiles,PosteriorOrbitalGyrus_R_centiles,PosteriorOrbitalGyrus_L_centiles,PlanumPolare_R_centiles,PlanumPolare_L_centiles,PrecentralGyrus_R_centiles,PrecentralGyrus_L_centiles,PlanumTemporale_R_centiles,PlanumTemporale_L_centiles,SubcallosalArea_R_centiles,SubcallosalArea_L_centiles,SuperiorFrontalGyrus_R_centiles,SuperiorFrontalGyrus_L_centiles,SupplementaryMotorCortex_R_centiles,SupplementaryMotorCortex_L_centiles,SupramarginalGyrus_R_centiles,SupramarginalGyrus_L_centiles,SuperiorOccipitalGyrus_R_centiles,SuperiorOccipitalGyrus_L_centiles,Superior_parietalLobule_R_centiles,Superior_parietalLobule_L_centiles,SuperiorTemporalGyrus_R_centiles,SuperiorTemporalGyrus_L_centiles,TemporalPole_R_centiles,TemporalPole_L_centiles,TriangularPartInferiorFrontalGyrus_R_centiles,TriangularPartInferiorFrontalGyrus_L_centiles,TransverseTemporalGyrus_R_centiles,TransverseTemporalGyrus_L_centiles,SPAREAD,SPAREAge,SurrealGAN_R1,SurrealGAN_R2,SurrealGAN_R3,SurrealGAN_R4,SurrealGAN_R5 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diff --git a/test_data/processed/IXI_n2/Nifti/T1/IXI012-HH-1211_T1.nii.gz b/test_data/processed/IXI_n2/Nifti/T1/IXI012-HH-1211_T1.nii.gz new file mode 100755 index 00000000..67842839 Binary files /dev/null and b/test_data/processed/IXI_n2/Nifti/T1/IXI012-HH-1211_T1.nii.gz differ diff --git a/test_data/processed/IXI_n2/Nifti/T1/IXI015-HH-1258_T1.nii.gz b/test_data/processed/IXI_n2/Nifti/T1/IXI015-HH-1258_T1.nii.gz new file mode 100755 index 00000000..136b0794 Binary files /dev/null and b/test_data/processed/IXI_n2/Nifti/T1/IXI015-HH-1258_T1.nii.gz differ diff --git a/test_data/processed/IXI_smallset/lists/Demog.csv b/test_data/processed/IXI_n2/lists/Demog.csv similarity index 100% rename from test_data/processed/IXI_smallset/lists/Demog.csv rename to test_data/processed/IXI_n2/lists/Demog.csv