diff --git a/README.md b/README.md index f9448b0..871f654 100644 --- a/README.md +++ b/README.md @@ -18,7 +18,7 @@ For recommended system configuration, please refer to: [nnUNet hardware requirem ## Installation Instructions -1. Mamba installation +1. (Optional but recommended for environment management) Mamba installation [Mamba Installation Guide (Official)](https://mamba.readthedocs.io/en/latest/installation/mamba-installation.html) Example (Linux x86): @@ -26,10 +26,10 @@ For recommended system configuration, please refer to: [nnUNet hardware requirem wget https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh bash Mambaforge-Linux-x86_64.sh - mamba create -c conda-forge -c bioconda -n NCP_env python=3.12 snakemake + mamba create -c conda-forge -c bioconda -n NCP_env python=3.12 mamba activate NCP_env ``` -2. Manual installation +2. Install NiChart_Project into the environment ```bash git clone https://github.com/CBICA/NiChart_Project.git pip install -r requirements.txt @@ -44,7 +44,7 @@ For recommended system configuration, please refer to: [nnUNet hardware requirem ``` Then install PyTorch using the following command. Make sure to use the correct index url for your CUDA version as specified on the [PyTorch getting started page](https://pytorch.org/get-started/locally/). - On Linux, version 2.3.1 is sufficient. On Windows, 2.5.1 is known to work. + On Linux, use version 2.3.1. On Windows, 2.5.1 is known to work. ``` pip install torch==2.3.1 --index-url https://download.pytorch.org/whl/cu121 ```