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Missing Files in Local DLICV Model #60

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Ouzaixin opened this issue Dec 5, 2024 · 1 comment
Open

Missing Files in Local DLICV Model #60

Ouzaixin opened this issue Dec 5, 2024 · 1 comment

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@Ouzaixin
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Ouzaixin commented Dec 5, 2024

When running the command NiChart_DLMUSE from the command line, I receive the following error:
Failed to establish a new connection: [Errno 101] Network is unreachable.
It seems that I am unable to download the model from Huggingface.

Despite this, the output indicates that the DLICV model has been successfully downloaded. However, the program cannot locate the necessary files, such as:
/site-packages/DLICV/nnunet_results/Dataset901_Task901_dlicv/nnUNetTrainer__nnUNetPlans__3d_fullres/dataset.json

As a result, I am unable to obtain the segmentation files.

@AlexanderGetka-cbica
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Hello, thank you for your interest in NiChart_DLMUSE.

I am not sure exactly how to resolve this at this time if huggingface is totally unreachable. I will look into a fix so that the system can fall back to a different location if the download fails.

As a workaround, if you are willing to use docker, you could try pulling the docker tag:
cbica/nichart_dlmuse:1.0.8

This docker image already contains the models pre-downloaded. Please let me know if you need any help running the docker container.

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