Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Should add an ROI-lookup feature to the CLI #45

Open
AlexanderGetka-cbica opened this issue Oct 15, 2024 · 0 comments
Open

Should add an ROI-lookup feature to the CLI #45

AlexanderGetka-cbica opened this issue Oct 15, 2024 · 0 comments

Comments

@AlexanderGetka-cbica
Copy link
Contributor

Some users are interested in getting the anatomical information from the ROIs and not just passing the DLMUSE output to downstream ML tasks. To enable quick use of the DLMUSE tools, it would be helpful for them to be able to access this information directly from the CLI without needing to find this file and Ctrl-F until they get what they want.

We already have the shared dictionary at https://github.com/CBICA/NiChart_DLMUSE/blob/main/NiChart_DLMUSE/shared/dicts/MUSE_ROI_complete_list.json which contains the ROI information. I suggest that we simply add a command line flag, something like "--roi-lookup 701" that finds the corresponding ROI information and renders it. This could just be the anatomical name, but it could also show the anatomical names of any ROIs it consists of too. If this flag is passed, all other input should probably be ignored.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant