From 2642ddac928d45ad3267ce80cacffb4a476ba18f Mon Sep 17 00:00:00 2001
From: Alexander Getka <59709326+AlexanderGetka-cbica@users.noreply.github.com>
Date: Thu, 28 Nov 2024 16:15:46 -0500
Subject: [PATCH 1/3] Add files via upload

---
 .github/workflows/github-repo-stats.yml | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)
 create mode 100644 .github/workflows/github-repo-stats.yml

diff --git a/.github/workflows/github-repo-stats.yml b/.github/workflows/github-repo-stats.yml
new file mode 100644
index 0000000..85156d2
--- /dev/null
+++ b/.github/workflows/github-repo-stats.yml
@@ -0,0 +1,19 @@
+name: github-repo-stats
+
+on:
+  schedule:
+    # Run this once per day, towards the end of the day for keeping the most
+    # recent data point most meaningful (hours are interpreted in UTC).
+    - cron: "0 23 * * *"
+  workflow_dispatch: # Allow for running this manually.
+
+jobs:
+  j1:
+    name: github-repo-stats
+    runs-on: ubuntu-latest
+    steps:
+      - name: run-ghrs
+        # Use latest release.
+        uses: jgehrcke/github-repo-stats@RELEASE
+        with:
+          ghtoken: ${{ secrets.GHRS_GITHUB_API_TOKEN }}

From 61e823742aac6657caff56b5d51254935427bb42 Mon Sep 17 00:00:00 2001
From: euroso97 <httpbdz012@gmail.com>
Date: Fri, 6 Dec 2024 11:19:36 -0600
Subject: [PATCH 2/3] small futureproofing for argparse

---
 DLICV/__main__.py | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/DLICV/__main__.py b/DLICV/__main__.py
index 3fcb061..1bde0dc 100644
--- a/DLICV/__main__.py
+++ b/DLICV/__main__.py
@@ -53,7 +53,7 @@ def main() -> None:
     )
     parser.add_argument(
         "-o",
-        "out_dir",
+        "--out_dir",
         type=str,
         required=True,
         help="[REQUIRED] Output folder. If it does not exist it will be created. Predicted segmentations will have the same name as their source images.",
@@ -204,6 +204,8 @@ def main() -> None:
 
     args = parser.parse_args()
     args.f = [0]
+    args.i = args.in_dir
+    args.o = args.out_dir
 
     if args.clear_cache:
         shutil.rmtree(os.path.join(Path(__file__).parent, "nnunet_results"))

From a26993672e946edebc307e8ff3f2ce6999d6b4da Mon Sep 17 00:00:00 2001
From: Alexander Getka <59709326+AlexanderGetka-cbica@users.noreply.github.com>
Date: Fri, 6 Dec 2024 13:38:31 -0600
Subject: [PATCH 3/3] Update setup.py

---
 setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.py b/setup.py
index 8ab2004..90acefb 100644
--- a/setup.py
+++ b/setup.py
@@ -12,7 +12,7 @@
 
 setup(
     name="DLICV",
-    version="1.0.3",
+    version="1.0.4",
     description="DLICV - Deep Learning Intra Cranial Volume.",
     long_description=long_description,
     long_description_content_type="text/markdown",