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I ran the opal_workflow.py script from OPAL with the sourmash biobox from #10 and the cami_ii_mg configs from the OPAL repo, but in the end the @SampleID were off-by-one (for sample_0 in the config file it had @SampleID:1 in the all_results.profile file). Is seems like the gold standard is counting from 0 (matching the filename), should it be counting from 1 to match the opal_workflow.py output?
(I'm not sure if this is the right repo to post given that it was triggered by OPAL, but the @SampleID issue seems to come from the Utils.pm script in this repo)
The text was updated successfully, but these errors were encountered:
Hello,
I ran the
opal_workflow.py
script from OPAL with the sourmash biobox from #10 and thecami_ii_mg
configs from the OPAL repo, but in the end the@SampleID
were off-by-one (forsample_0
in the config file it had@SampleID:1
in theall_results.profile
file). Is seems like the gold standard is counting from 0 (matching the filename), should it be counting from 1 to match theopal_workflow.py
output?(I'm not sure if this is the right repo to post given that it was triggered by OPAL, but the
@SampleID
issue seems to come from theUtils.pm
script in this repo)The text was updated successfully, but these errors were encountered: