Project Summary

Our proposed final project is to implement the 'black box' method for searching a large text file for specific patterns.

Code

All code files can be found in the code/ directory. To run the code:

Create a build directory inside code/
CD into build and run cmake .. and make.
Modify the main.cpp file to run whichever .csv parsed file you want to time.

The test data contains RNA sequencing studies of mice with sizes ranging from 100 subsampled kmers to 10000 kmers.

The proposal can be found in the documents/ directory.

All feedback from our project mentor can be found in the feedback/ directory.