diff --git a/Dockerfile b/Dockerfile index 0689e82..de25cd3 100644 --- a/Dockerfile +++ b/Dockerfile @@ -39,8 +39,9 @@ RUN pip install git+https://github.com/BlueBrain/bbp-atlas-data-fetch.git@v0.3.0 # densities validation #RUN pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ "densities-validation>=0.1.1" -# leaves-only -RUN pip install git+https://github.com/BlueBrain/cell-density-validations.git #@v0.2.1 +# leaves-only @v0.2.1 +RUN git clone https://github.com/BlueBrain/cell-density-validations.git cell_densities_validations && \ + pip install cell_densities_validations/cell-densities/ # module load py-bba-webexporter RUN pip install git+https://github.com/BlueBrain/bbp-atlas-web-exporter.git@v3.0.0 diff --git a/requirements.txt b/requirements.txt index 632be82..f18d67d 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,10 +1,13 @@ +pytest +pytest-cov +pyyaml nexusforge>=0.8.2 -click +sphinx +sphinx-bluebrain-theme +myst-parser numpy -pynrrd -pyyaml voxcell -pulp==2.7.0 # snakemake 7.32.3 breaks with pulp==2.8.0 -snakemake==7.32.3 +click blue-cwl +pipeline-validator>=0.3.1 python-gitlab