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CHANGELOG.rst

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Changelog

Version 3.1.0

Fixed

  • The bounding box for the microdomains is now consistent with the region of interest that has been selected.
  • Replaces the use of the unmaintained python package TNS by the Neurots one.

Version 3.0.3

Fixed

  • Fixed the snakemake syntax and code style by adding snakefmt requirement and command into the lint target of tox.ini
  • Move module release from 2023-03 to 2023-05 because of a libsonata issue: ImportError: cannot import name 'CircuitConfigStatus' from 'libsonata'

Version 3.0.2

Improvements

Version 2.0.2

Improvements

  • Simplified NGV exporters and removed a lot of redundant code. [NSETM-1927]
  • Make the NGV population types consistent with the SONATA documentation, and maintain backward backward compatibility with the legacy types. [NSETM-1923]

Fixed

  • Output the correct key entry 'endfeet_meshes_file' for the endfeet meshes path in the SONATA config. Maintain backward compatibility with the old 'endfeet_meshes' entry. [NSETM-1904]

Version 2.0.1

New Features

  • NGV building supports circuit-build manifests, where the ngv specific configuration has to be under a root entry 'ngv', [NSETM-1872]

Version 2.0.0

Improvements

  • Endfeet meshes file layout has been converted to the grouped properties one. [NSETM-1830]
  • Merge microdomain files into a single file at the build root level. [NSETM-1807]
  • Use a generic file layout for grouped properties to store the microdomains that can be extended with and arbitrary number of additional properties. [NSETM-1807]
  • Multiple yaml configuration files merged into the main MANIFEST.yaml. [NSETM-1746]
  • Refactored the neuroglial connectivity out of ngv.py to reduce its size. [NSETM-1768]
  • Refactored the gliovascular connectivity out of ngv.py to reduce its size.
  • The app cli has been compressed into the ngv.py module. [NSETM-1740]

New Features

  • Resampling was added in synthesis to create an upper bound in morphology points [NSETM-1778].

Removed

  • SONATA config no longer stores the bioname parameters. [NSETM-1746]
  • The deprecated extras subpackage has been removed.