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rhistory.html
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<!DOCTYPE html>
<html lang="en">
<head>
<style>
body {
font-family: Arial, sans-serif;
margin: 0;
padding: 0;
background-color: #F8F9FA;
}
.container {
width: 80%;
margin: 0 auto;
padding: 20px;
}
.header {
text-align: center;
padding: 20px;
background-color: #2C3143;
color: white;
}
.header h1 {
margin: 0;
}
.content {
text-align: left;
padding: 20px;
background-color: #FFFFFF;
margin-bottom: 10px;
border-radius: 5px;
}
.button {
display: inline-block;
padding: 10px 20px;
margin: 20px 0;
color: white;
background-color: #87b13f;
text-decoration: none;
border-radius: 5px;
}
.button:hover {
background-color: #6a8f33;
}
.button-small {
display: inline-block;
padding: 10px 20px;
margin: 20px 0;
color: #2C3143;
background-color: white;
text-decoration: none;
border-radius: 5px;
border: 2px solid #2C3143;
}
.content h3 {
margin-top: 20px;
}
.content img {
max-width: 100%;
height: auto;
}
.content ul {
margin-left: 20px;
}
.footer {
text-align: center;
padding: 5px;
background-color: #2C3143;
color: white;
}
.footer a {
color: white;
text-decoration: none;
}
.footer a:hover {
text-decoration: underline;
}
.navigation {
line-height: 1.6;
margin-bottom: 20px;
}
.navigation h5 {
margin-bottom: 10px;
}
.navigation h5 a {
color: #2C3143;
text-decoration: none;
}
.navigation h5 a:hover {
text-decoration: underline;
}
.screenshot {
width: 400px;
height: auto;
}
</style>
<meta charset="utf-8">
<title>How to use workshop.bioconductor.org</title>
</head>
<body>
<div class="header">
<h1>How to use workshop.bioconductor.org</h1>
</div>
<div class="container">
<div class="content">
<h1>Smörgåsbord 2023 Certificates</h1>
<p>If you wish for Smörgåsbord organisers to issue you a Certificate proving your succesful and active participation in Smörgåsbord 2023, you will have to meet all activity requirements.</p>
<p>Full certificate requirements are listed on the <a href="https://gallantries.github.io/video-library/events/smorgasbord3">event home page, in the "About Certificates" section</a>. Below is adapted information for saving .Rhistory files instead of Galaxy histories for R-based workshops.
<ol>
<li> Have a registration for this event. </li>
<li> Save all your Galaxy histories for Galaxy tutorials (see details on <a href="https://gallantries.github.io/video-library/events/smorgasbord3">the event page</a>) or all your .Rhistories for Bioconductor R-based workshops (see details below).</li>
<li> Register completion of tutorials using the Certificate Bot for Galaxy tutorials (see <a href="https://gallantries.github.io/video-library/events/smorgasbord3">event page</a>), or <a href="https://forms.gle/L2iEJkhnhXYdtZD48" target="_blank">the following form</a> for Bioconductor R-based workshops.</li>
<li> Answer the <strong>icebreakers question</strong> on Slack every day!</li>
<li> Be active on <strong>Slack</strong>!</li>
<ul>
<li> <strong>Join the Slack channels</strong> for every training session you follow this week (see details on <a href="https://gallantries.github.io/video-library/events/smorgasbord3">the event page</a>) </li>
<li> Let us know when you are <strong>starting with a session</strong> in the session's dedicated Slack channel</li>
<li> <strong>Talk about the session</strong>! Get stuck? Have a question about the science? want to discuss anything? want to thank your instructors? do it in Slack!</li>
<li> Whenever you <strong>finish a session</strong>, let us know what you thought of it!</li>
<li> Enjoyed a tutorial? Take a moment to <strong>thank your (volunteer) instructors and speakers</strong> on Slack</li>
<li>And please, feel free to help other participants on Slack if you know the answer!</li>
</ul>
<li>Fill out our feedback survey. This will help us improve this event in the future.</li>
</ol>
<br>
<p>In order to prove your successful completion of a Bioconductor workshop, you will be required to export and provide your <strong>.Rhistory file from EACH completed workshop, by filling out <a href="https://forms.gle/L2iEJkhnhXYdtZD48">the following form </a>.</strong></p>
<p>Please export your .Rhistory as soon as you are done with a workshop, to avoid the possibility of losing your progress. You will not be able to recover your .Rhistory after the workshop is stopped.</p>
<h2>How to Save your .Rhistory</h2>
<h3 id="create">1) Create the .Rhistory file</h3>
<p>In order to save a history of the R code run in the session up to that point, you may use the built-in <a href="https://rdrr.io/r/utils/savehistory.html">savehistory(file=".Rhistory")</a> function in R.</p>
<p>This can be done by running the code in the console, as shown in 1 below.</p>
<p>After running, an .Rhistory file will be created in your Home directory, which you may access by clicking the Home button in the Files pane, as shown in 2 below.</p>
<img src="https://github.com/Bioconductor/workshop-contributions/raw/main/images/rhistory-save-1.png" alt="Screenshot of running savehistory" class="screenshot">
<h3 id="export">2) Export the .Rhistory file</h3>
<p>In order to export the .Rhistory file, after navigating to the Home directory as shown above, you must first select the .Rhistory file by checking the appropriate box, as shown in 1 below.</p>
<p>After selecting the file, you will have to click on the More button, as shown in 2 below, then the Export option from the dropdown menu, as shown in 3 below.</p>
<img src="https://github.com/Bioconductor/workshop-contributions/raw/main/images/rhistory-save-2.png" alt="Screenshot of running savehistory" class="screenshot">
<h3 id="download">3) Rename and download the .Rhistory file</h3>
<p>After clicking the Export button as shown above, a new window will prompt you for the name under which to save the desired file on your own computer.</p>
<p>We recommend changing the name for each workshop, to facilitate saving and later identifying histories from multiple workshops.</p>
<p>Change the name by typing the desired filename in the text box as shown in 1 below, then download the file by pressing the Download button, as shown in 2 below.</p>
<p>Generally, the resulting file will be downloaded in your Downloads folder. Note that using Incognito/Private Mode or the equivalent, can result in your downloaded files being automatically deleted when you close your browser.</p>
<p>Depending on your Browser and Operating System settings, you might be further prompted to choose a location on your computer.</p>
<img src="https://github.com/Bioconductor/workshop-contributions/raw/main/images/rhistory-save-3.png" alt="Screenshot of running savehistory" class="screenshot">
<h3 id="form">4) Fill out the <a href="https://forms.gle/L2iEJkhnhXYdtZD48">Certificate Request Form</a></h3>
<p>We recommend you save your Rhistory when taking long breaks from a workshop, and as soon as a workshop is completed.</p>
<p>We might accept partial histories on a case-by-base basis, but cannot issue a certificate if no evidence of completion is provided.</p>
<p>After the .Rhistory is saved, you will need to fill out the Fill out the <a href="https://forms.gle/L2iEJkhnhXYdtZD48">Certificate Request Form</a> and upload the Rhistory for EACH workshop.</p>
<p>You will receive your certificate via the provided email, a few weeks after the end of the event.</p>
</div>
<p><a href="welcome.html" class="button" target="_self">Return to Welcome Page</a></p>
</div>
<div class="footer">
<p><a href="tos.html">Terms of Service</a> and <a href="privacy-policy.html">Privacy Policy</a></p>
<p><a href="https://support.bioconductor.org/" target="_blank">Contact us: support.bioconductor.org</a></p>
</div>
</body>
</html>