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FEATURE REQUEST: Improve seqinfo(<BamFile>) to return the genome assembly associated with each sequence #61

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hpages opened this issue Feb 14, 2024 · 0 comments
Open

FEATURE REQUEST: Improve seqinfo(<BamFile>) to return the genome assembly associated with each sequence #61

hpages opened this issue Feb 14, 2024 · 0 comments

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@hpages
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hpages commented Feb 14, 2024

Right now seqinfo(<BamFile>) returns a Seqinfo object with no genome information, even though that information is available in the file (the genome assembly is specified via the AS tag found in the @SQ header lines).

See Bioconductor/GenomeInfoDb#105 (comment) for some context.

I'll try to come up with a PR that fixes that.
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