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Noting this for my own reference to fix in the (near) future:
readXStringSet internal methods do not use the correct method of throwing warnings. I'm assuming this is the case for both FASTA and FASTQ files. The error comes from read_fasta_files.c (and equivalent for fastq)--internal methods call snprintf rather than warning(). This means that warnings cannot be suppressed using R error handling (e.g., suppressWarnings) or elevated with options(warn=2). See for example read_fasta_files.c:326.
The text was updated successfully, but these errors were encountered:
Noting this for my own reference to fix in the (near) future:
readXStringSet
internal methods do not use the correct method of throwing warnings. I'm assuming this is the case for both FASTA and FASTQ files. The error comes fromread_fasta_files.c
(and equivalent for fastq)--internal methods callsnprintf
rather thanwarning()
. This means that warnings cannot be suppressed using R error handling (e.g.,suppressWarnings
) or elevated withoptions(warn=2)
. See for exampleread_fasta_files.c:326
.The text was updated successfully, but these errors were encountered: