PKG-INFO

Metadata-Version: 2.1
Name: mewpy
Version: 0.1.34
Summary: MEWpy - Metabolic Engineering in Python 
Home-page: https://github.com/BioSystemsUM/mewpy/
Author: BiSBII CEB University of Minho
Author-email: vpereira@ceb.uminho.pt
License: GPL v3 License
Project-URL: Bug Tracker, https://github.com/BioSystemsUM/mewpy/issues
Project-URL: Documentation, https://mewpy.readthedocs.io
Keywords: strain optimization
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: cobra
Requires-Dist: inspyred
Requires-Dist: jmetalpy<=1.5.5
Requires-Dist: reframed
Requires-Dist: networkx
Requires-Dist: matplotlib<=3.5.0
Requires-Dist: joblib
Requires-Dist: tdqm
Requires-Dist: httpx<=0.23.0

MEWpy
======

MEWpy is an integrated Metabolic Engineering Workbench for strain design optimization. 
It offers methods to explore different classes of constraint-based models (CBM) for:

- Simulation: allows to simulate steady-state metabolic models, considering different formulations (e.g., GECKO, ETFL) and kinetic models;
- Optimization: performs Evolutionary Computation based strain design optimization by knocking out (KO) or over/under expressing (OU) reactions, genes, or enzymes.
- Omics data integration (eFlux, GIMME, iMAT);
- Regulatory networks integration (rFBA, srFBA)

MEWPy currently supports REFRAMED and COBRApy simulation environments. 

Documentation
-------------

For documentation and API please check: `https://mewpy.readthedocs.io <https://mewpy.readthedocs.io>`_


Installation
------------

pip install mewpy


Credits and License
-------------------

Developed at:
-  Centre of Biological Engineering, University of Minho (2019-)